main.tex

% -*- Mode:TeX -*-

%% IMPORTANT: There are no official thesis specifications.
%%            This unofficial thesis specifications are available at:
%%            https://github.com/ikenichiro/KeioSDM_phdtmp
%%
%%            The original format and specifications are from mit,
%%            which can be found at:
%%            http://libraries.mit.edu/archives/thesis-specs/
%%
%%            Please verify your thesis' formatting and copyright
%%            assignment before submission. If you notice any
%%            discrepancies between these templates and the
%%            Keio Universitys' specs, please let me know
%%            from the github issue.

%% The documentclass options along with the pagestyle can be used to generate
%% a technical report, a draft copy, or a regular thesis.  You may need to
%% re-specify the pagestyle after you \include  cover.tex.  For more
%% information, see the first few lines of keiosdmthesis.cls. 

%\documentclass[12pt,vi,twoside]{keiosdmthesis}
%%
%%  If you want your thesis copyright to you instead of Keio University, use the
%%  ``vi'' option, as above.
%%
%\documentclass[12pt,twoside,leftblank]{keiosdmthesis}
%%
%% If you want blank pages before new chapters to be labelled ``This
%% Page Intentionally Left Blank'', use the ``leftblank'' option, as
%% above.
%\RequirePackage{pdf14}
\documentclass[12pt,vi,twoside]{keiosdmthesis}
\usepackage{lgrind}
%% These have been added at the request of the MIT Libraries, because
%% some PDF conversions mess up the ligatures.  -LB, 1/22/2014
\usepackage{cmap}
\usepackage[T1]{fontenc}
\pagestyle{plain}

%% These have been added to use pdf figures
\usepackage{epsfig} \let\epsfile=\epsfig%
\usepackage{epic,eepic}
\usepackage[dvipdfmx]{color}

%% Some commonly used packages.
%\usepackage{cleveref}
%\usepackage{amsmath,amssymb}
%\usepackage{etoolbox}
%\usepackage{booktabs}
%\usepackage{color}
%\usepackage{url}
%\usepackage{siunitx}
%
%% These have been added for glossaries
%\usepackage[nonumberlist,acronym,toc]{glossaries}
%% These are for trademark but usage of trademark in academic thesis are not recommended.
%\usepackage{textcomp} 
%
%\usepackage{listings}
%\usepackage{multirow}
%\usepackage[figuresright]{rotating}
%\usepackage[flushleft]{threeparttable}
%\usepackage{comment}
%
%\usepackage[dvipdfmx,bookmarks=true]{hyperref}
%% This is a hyperref hack to make it work at the least with emath.
%% Be sure this comes after all of the \usepackage
%\AtBeginDocument{\let\textlabel\label}%

%% This allows to label in the text so it can cross-ref from Appendix easily.
%% Try considering cleveref from the start of your thesis.
%% This hack was done on the last minutes just to adapt to cleveref in aux.
%% Original code can be found at,
%% https://tex.stackexchange.com/questions/271062/labeling-a-text-and-referencing-it-later
%% Usage:
%% \labelText{}{a:ch1:labelname}
%% type out by:
%% \cref{a:ch1:labelname}
%\newcounter{mylabelcounter}
%\makeatletter
%\newcommand{\labelText}[2]{%
%  #1\refstepcounter{mylabelcounter}%
%  \immediate\write\@auxout{%
%  %make it accessable from cref
%    \string\newlabel{#2}{{1}{\thepage}{{\unexpanded{#1}}}{mylabelcounter.\number\value{mylabelcounter}}{}}%
%  }
%  \immediate\write\@auxout{%
%    \string\newlabel{#2@cref}{{[page][\thepage]}{\thepage}}%
%  }%
%}
\makeatother
%% Ends here

%% This bit allows you to either specify only the files which you wish to
%% process, or `all' to process all files which you \include.
%% Krishna Sethuraman (1990).

%\typein [\files]{Enter file names to process, (chap1,chap2 ...), or `all' to process all files:}
%\typein[\files]{chap1}
%\def\all{all}
%\ifx\files\all \typeout{Including all files.} \else \typeout{Including only \files.} \includeonly{\files} \fi
%\includeonly{chap1,chap2}

%% Define the sort mode for bibliography
\bibliographystyle{junsrt}
%% Rename the title for bibliography
\renewcommand{\bibname}{List of References}

%% Define glossaries
%% Generate list of symbols
%\newglossary[slg]{symbols}{syi}{syg}{List of symbols}
%% Remove the dot at the end of glossary descriptions
%\renewcommand*{\glspostdescription}{}
%\makeglossaries%
%% Load nomenclature and glossary files
%\loadglsentries{nomenclature}
%\loadglsentries{glossary} %Acronyms here

%%setup for siunitx
%\sisetup{binary-units,per-mode=symbol}

\begin{document}
%% Set page numbering as roman until the thesis actually starts
\pagenumbering{roman}
\setcounter{page}{1}

\include{cover}
%% Some departments require an additional signature page.
%% See signature.tex for more information and uncomment the following line if applicable.
\include{signature}
\pagestyle{plain}
%% This is to make Table of Contents
\include{contents}
%% Start page count in arabic after Table of Contents
\pagenumbering{arabic}
\setcounter{page}{1}
\include{chap1}
\include{chap2}
\include{chap3}
\include{chap4}
\appendix
%% Appendix Tables
\include{appa}
%% Appendix Figures and Codes
\include{appb}
%% List of symbols, nomenclature, glossary
\include{lists}
%% List of bibliography
\include{biblio}
%% List of related publications
\include{mypubs}
\end{document}