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This issue has been partially fixed by #5697 (which is in master). Depending on what is causing it in your particular case, you may also need one or more of #5732 (being developed by the influx guys). My fix #5716 also addresses this issue in a different way.
To take advantages of these fixes right now you need to create a local build.
The issue is caused in part by empty column names that are currently created when you do maths on an aggregate with a SELECT INTO query, something like:
select count(value)/100 into "downsample" time > now() - 4d group by time(1h)
A workaround is to add aliases to all columns which do maths of SELECT INTO statements in your CQs, in this case:
select count(value)/100 as sampled into "downsample" time > now() - 4d group by time(1h)
The workaround may be the easiest thing to try at this point.
I yesterday upgraded from 0.9.6 to 0.10.0 (did not convert old data to tsm), and added a new CQ. At midnight InfluxDB paniced:
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