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iao-edit.owl
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<?xml version="1.0"?>
<rdf:RDF xmlns="http://purl.obolibrary.org/obo/iao/iao-edit.owl/"
xml:base="http://purl.obolibrary.org/obo/iao/iao-edit.owl/"
xmlns:dc="http://purl.org/dc/elements/1.1/"
xmlns:obo="http://purl.obolibrary.org/obo/"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:xml="http://www.w3.org/XML/1998/namespace"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:xsp="http://www.owl-ontologies.com/2005/08/07/xsp.owl#"
xmlns:foaf="http://xmlns.com/foaf/0.1/"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:swrl="http://www.w3.org/2003/11/swrl#"
xmlns:swrlb="http://www.w3.org/2003/11/swrlb#"
xmlns:terms="http://purl.org/dc/terms/"
xmlns:protege="http://protege.stanford.edu/plugins/owl/protege#"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/iao/iao-edit.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/iao/dev/iao-edit.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/omo.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/iao/dev/externalByHand.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/iao/dev/import_OBI.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/iao/dev/import_PATO.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/iao/dev/import_RO.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/iao/dev/import_UO.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/iao/dev/obsolete.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/ro/core.owl"/>
<protege:defaultLanguage rdf:datatype="http://www.w3.org/2001/XMLSchema#string">en</protege:defaultLanguage>
<dc:contributor xml:lang="en">Adam Goldstein</dc:contributor>
<dc:contributor xml:lang="en">Alan Ruttenberg</dc:contributor>
<dc:contributor xml:lang="en">Albert Goldfain</dc:contributor>
<dc:contributor xml:lang="en">Barry Smith</dc:contributor>
<dc:contributor xml:lang="en">Bjoern Peters</dc:contributor>
<dc:contributor xml:lang="en">Carlo Torniai</dc:contributor>
<dc:contributor xml:lang="en">Chris Mungall</dc:contributor>
<dc:contributor xml:lang="en">Chris Stoeckert</dc:contributor>
<dc:contributor xml:lang="en">Christian A. Boelling</dc:contributor>
<dc:contributor xml:lang="en">Clint Dowland</dc:contributor>
<dc:contributor xml:lang="en">Darren Natale</dc:contributor>
<dc:contributor xml:lang="en">David Osumi-Sutherland</dc:contributor>
<dc:contributor xml:lang="en">Gwen Frishkoff</dc:contributor>
<dc:contributor xml:lang="en">Holger Stenzhorn</dc:contributor>
<dc:contributor xml:lang="en">James A. Overton</dc:contributor>
<dc:contributor xml:lang="en">James Malone</dc:contributor>
<dc:contributor xml:lang="en">Jennifer Fostel</dc:contributor>
<dc:contributor xml:lang="en">Jie Zheng</dc:contributor>
<dc:contributor xml:lang="en">Jonathan Rees</dc:contributor>
<dc:contributor xml:lang="en">Larisa Soldatova</dc:contributor>
<dc:contributor xml:lang="en">Lawrence Hunter</dc:contributor>
<dc:contributor xml:lang="en">Mathias Brochhausen</dc:contributor>
<dc:contributor xml:lang="en">Matt Brush</dc:contributor>
<dc:contributor xml:lang="en">Melanie Courtot</dc:contributor>
<dc:contributor xml:lang="en">Michel Dumontier</dc:contributor>
<dc:contributor xml:lang="en">Paolo Ciccarese</dc:contributor>
<dc:contributor xml:lang="en">Pat Hayes</dc:contributor>
<dc:contributor xml:lang="en">Philippe Rocca-Serra</dc:contributor>
<dc:contributor xml:lang="en">Randy Dipert</dc:contributor>
<dc:contributor xml:lang="en">Ron Rudnicki</dc:contributor>
<dc:contributor xml:lang="en">Satya Sahoo</dc:contributor>
<dc:contributor xml:lang="en">Sivaram Arabandi</dc:contributor>
<dc:contributor xml:lang="en">Werner Ceusters</dc:contributor>
<dc:contributor xml:lang="en">William Duncan</dc:contributor>
<dc:contributor xml:lang="en">William Hogan</dc:contributor>
<dc:contributor xml:lang="en">Yongqun (Oliver) He</dc:contributor>
<dc:description>The Information Artifact Ontology (IAO) is an ontology of information entities, originally driven by work by the OBI digital entity and realizable information entity branch.</dc:description>
<dc:title>Information Artifact Ontology (IAO)</dc:title>
<terms:license rdf:resource="http://creativecommons.org/licenses/by/4.0/"/>
<rdfs:comment xml:lang="en">An information artifact is, loosely, a dependent continuant or its bearer that is created as the result of one or more intentional processes. Examples: uniprot, the english language, the contents of this document or a printout of it, the temperature measurements from a weather balloon. For more information, see the project home page at https://github.com/information-artifact-ontology/IAO</rdfs:comment>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">IDs allocated to related efforts: PNO: IAO_0020000-IAO_0020999, D_ACTS: IAO_0021000-IAO_0021999</rdfs:comment>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">IDs allocated to subdomains of IAO. pno.owl: IAO_0020000-IAO_0020999, d-acts.owl: IAO_0021000-IAO_0021999</rdfs:comment>
<rdfs:seeAlso rdf:resource="https://github.com/information-artifact-ontology/IAO"/>
</owl:Ontology>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Annotation properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://protege.stanford.edu/plugins/owl/protege#defaultLanguage -->
<owl:AnnotationProperty rdf:about="http://protege.stanford.edu/plugins/owl/protege#defaultLanguage"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000111 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000111"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000113 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000113"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000114 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000114"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000115 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000115"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000116 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000116"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000117 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000117"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000118 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000118"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000119 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000119"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000231 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000231"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000233 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000233"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000234 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000234"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000412 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000412"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000604 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000604">
<obo:IAO_0000111 xml:lang="en">retired from use as of</obo:IAO_0000111>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">relates a class of CRID to the date after which further instances should not be made, according to the central authority</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">In OWL 2 add AnnotationPropertyRange xsd:dateTimeStamp</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">retired from use as of</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.w3.org/2000/01/rdf-schema#comment -->
<owl:AnnotationProperty rdf:about="http://www.w3.org/2000/01/rdf-schema#comment"/>
<!-- http://www.w3.org/2000/01/rdf-schema#label -->
<owl:AnnotationProperty rdf:about="http://www.w3.org/2000/01/rdf-schema#label"/>
<!-- http://www.w3.org/2000/01/rdf-schema#seeAlso -->
<owl:AnnotationProperty rdf:about="http://www.w3.org/2000/01/rdf-schema#seeAlso"/>
<!-- http://xmlns.com/foaf/0.1/page -->
<owl:AnnotationProperty rdf:about="http://xmlns.com/foaf/0.1/page"/>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Object Properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/BFO_0000050 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000050"/>
<!-- http://purl.obolibrary.org/obo/BFO_0000051 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000051"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000039 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000039">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#FunctionalProperty"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/IAO_0000003"/>
<rdfs:label xml:lang="en">has measurement unit label</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000136 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000136">
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
<obo:IAO_0000112 xml:lang="en">This document is about information artifacts and their representations</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">A (currently) primitive relation that relates an information artifact to an entity.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">7/6/2009 Alan Ruttenberg. Following discussion with Jonathan Rees, and introduction of "mentions" relation. Weaken the is_about relationship to be primitive.
We will try to build it back up by elaborating the various subproperties that are more precisely defined.
Some currently missing phenomena that should be considered "about" are predications - "The only person who knows the answer is sitting beside me" , Allegory, Satire, and other literary forms that can be topical without explicitly mentioning the topic.</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">person:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">Smith, Ceusters, Ruttenberg, 2000 years of philosophy</obo:IAO_0000119>
<rdfs:label xml:lang="en">is about</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000142 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000142">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000136"/>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000143"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">An information artifact IA mentions an entity E exactly when it has a component/part that denotes E</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">7/6/2009 Alan Ruttenberg. P4 RC1 munges our GCI so remove it for now: mentions some entity equivalentTo has_part some ('generically denotes' some entity)</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">7/6/2009 Alan Ruttenberg: Add this relation following conversation with Jonathan Rees that N&S GCI for is_about was too strong. Really it was simply sufficient. To effect this change we introduce this relation, which is subproperty of is_about, and have previous GCI use this relation "mentions" in it's (logical) definition</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">PERSON: Jonathan Rees</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">Person: Alan Ruttenberg</obo:IAO_0000117>
<rdfs:label xml:lang="en">mentions</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000143 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000143">
<obo:IAO_0000115 xml:lang="en">Inverse of the relation 'mentions'</obo:IAO_0000115>
<obo:IAO_0000117 rdf:resource="http://orcid.org/0000-0002-8844-9165"/>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/250"/>
<dc:date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2022-01-28T07:20:08Z</dc:date>
<rdfs:label xml:lang="en">mentioned by</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000219 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000219">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000136"/>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000235"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000001"/>
<obo:IAO_0000112 xml:lang="en">A person's name denotes the person. A variable name in a computer program denotes some piece of memory. Lexically equivalent strings can denote different things, for instance "Alan" can denote different people. In each case of use, there is a case of the denotation relation obtaining, between "Alan" and the person that is being named.</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A primitive, instance-level, relation obtaining between an information content entity and some portion of reality. Denotation is what happens when someone creates an information content entity E in order to specifically refer to something. The only relation between E and the thing is that E can be used to 'pick out' the thing. This relation connects those two together. Freedictionary.com sense 3: To signify directly; refer to specifically</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">2009-11-10 Alan Ruttenberg. Old definition said the following to emphasize the generic nature of this relation. We no longer have 'specifically denotes', which would have been primitive, so make this relation primitive.
g denotes r =def
r is a portion of reality
there is some c that is a concretization of g
every c that is a concretization of g specifically denotes r</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">person:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">Conversations with Barry Smith, Werner Ceusters, Bjoern Peters, Michel Dumontier, Melanie Courtot, James Malone, Bill Hogan</obo:IAO_0000119>
<rdfs:comment xml:lang="en"></rdfs:comment>
<rdfs:label xml:lang="en">denotes</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000221 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000221">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000136"/>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000417"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/IAO_0000109"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000019"/>
<obo:IAO_0000115 xml:lang="en">m is a quality measurement of q at t. When q is a quality, there is a measurement process p that has specified output m, a measurement datum, that is about q</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">8/6/2009 Alan Ruttenberg: The strategy is to be rather specific with this relationship. There are other kinds of measurements that are not of qualities, such as those that measure time. We will add these as separate properties for the moment and see about generalizing later</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">From the second IAO workshop [Alan Ruttenberg 8/6/2009: not completely current, though bringing in comparison is probably important]
This one is the one we are struggling with at the moment. The issue is what a measurement measures. On the one hand saying that it measures the quality would include it "measuring" the bearer = referring to the bearer in the measurement. However this makes comparisons of two different things not possible. On the other hand not having it inhere in the bearer, on the face of it, breaks the audit trail.
Werner suggests a solution based on "Magnitudes" a proposal for which we are awaiting details.
--
From the second IAO workshop, various comments, [commented on by Alan Ruttenberg 8/6/2009]
unit of measure is a quality, e.g. the length of a ruler.
[We decided to hedge on what units of measure are, instead talking about measurement unit labels, which are the information content entities that are about whatever measurement units are. For IAO we need that information entity in any case. See the term measurement unit label]
[Some struggling with the various subflavors of is_about. We subsequently removed the relation represents, and describes until and only when we have a better theory]
a represents b means either a denotes b or a describes
describe:
a describes b means a is about b and a allows an inference of at least one quality of b
We have had a long discussion about denotes versus describes.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">From the second IAO workshop: An attempt at tieing the quality to the measurement datum more carefully.
a is a magnitude means a is a determinate quality particular inhering in some bearer b existing at a time t that can be represented/denoted by an information content entity e that has parts denoting a unit of measure, a number, and b. The unit of measure is an instance of the determinable quality.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">From the second meeting on IAO:
An attempt at defining assay using Barry's "reliability" wording
assay:
process and has_input some material entity
and has_output some information content entity
and which is such that instances of this process type reliably generate
outputs that describes the input.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">This one is the one we are struggling with at the moment. The issue is what a measurement measures. On the one hand saying that it measures the quality would include it "measuring" the bearer = referring to the bearer in the measurement. However this makes comparisons of two different things not possible. On the other hand not having it inhere in the bearer, on the face of it, breaks the audit trail.
Werner suggests a solution based on "Magnitudes" a proposal for which we are awaiting details.</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
<rdfs:label xml:lang="en">is quality measurement of</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000235 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000235">
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000001"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
<obo:IAO_0000115 xml:lang="en">inverse of the relation 'denotes'</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Person: Jie Zheng, Chris Stoeckert, Mike Conlon</obo:IAO_0000117>
<obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/IAO/issues/206"/>
<rdfs:label xml:lang="en">denoted by</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000407 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000407">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#FunctionalProperty"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/IAO_0000400"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/UO_0000001"/>
<rdfs:comment xml:lang="en">relating a cartesian spatial coordinate datum to a unit label that together with the values represent a point</rdfs:comment>
<rdfs:label xml:lang="en">has coordinate unit label</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000413 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000413">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000136"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/IAO_0000416"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">relates a process to a time-measurement-datum that represents the duration of the process</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000117>
<rdfs:label xml:lang="en">is duration of</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000417 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000417">
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">inverse of the relation of is quality measurement of</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">2009/10/19 Alan Ruttenberg. Named 'junk' relation useful in restrictions, but not a real instance relationship</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000117>
<rdfs:label xml:lang="en">is quality measured as</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000418 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000418">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000136"/>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000419"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A relation between a data item and a quality of a material entity where the material entity is the specified output of a material transformation which achieves an objective specification that indicates the intended value of the specified quality.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">Person:Bjoern Peters</obo:IAO_0000117>
<rdfs:label xml:lang="en">is quality specification of</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000419 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000419">
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">inverse of the relation of is quality specification of</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">2009/10/19 Alan Ruttenberg. Named 'junk' relation useful in restrictions, but not a real instance relationship</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">Person:Bjoern Peters</obo:IAO_0000117>
<rdfs:label xml:lang="en">quality is specified as</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000581 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000581">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#FunctionalProperty"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/IAO_0000582"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/IAO_0000416"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">relates a time stamped measurement datum to the time measurement datum that denotes the time when the measurement was taken</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
<rdfs:label xml:lang="en">has time stamp</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000583 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000583">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/IAO_0000582"/>
<rdfs:range>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000109"/>
<owl:Class>
<owl:complementOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000416"/>
</owl:Class>
</owl:intersectionOf>
</owl:Class>
</rdfs:range>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">relates a time stamped measurement datum to the measurement datum that was measured</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
<rdfs:label xml:lang="en">has measurement datum</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/OBI_0000293 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/OBI_0000293"/>
<!-- http://purl.obolibrary.org/obo/OBI_0000299 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/OBI_0000299"/>
<!-- http://purl.obolibrary.org/obo/RO_0000053 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000053"/>
<!-- http://purl.obolibrary.org/obo/RO_0000058 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000058"/>
<!-- http://purl.obolibrary.org/obo/RO_0000059 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000059"/>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Data properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/IAO_0000004 -->
<owl:DatatypeProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000004">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#FunctionalProperty"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/IAO_0000032"/>
<rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#double"/>
<rdfs:label xml:lang="en">has measurement value</rdfs:label>
</owl:DatatypeProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000404 -->
<owl:DatatypeProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000404">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#FunctionalProperty"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/IAO_0000400"/>
<rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#float"/>
<rdfs:label xml:lang="en">has x coordinate value</rdfs:label>
</owl:DatatypeProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000405 -->
<owl:DatatypeProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000405">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#FunctionalProperty"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/IAO_0000400"/>
<rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#float"/>
<rdfs:label xml:lang="en">has z coordinate value</rdfs:label>
</owl:DatatypeProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000406 -->
<owl:DatatypeProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000406">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#FunctionalProperty"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/IAO_0000400"/>
<rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#float"/>
<rdfs:label xml:lang="en">has y coordinate value</rdfs:label>
</owl:DatatypeProperty>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Classes
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000008 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000008">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000011"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
<owl:someValuesFrom>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000010"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000096"/>
</owl:unionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<obo:IAO_0000115 xml:lang="en">A planned process that has specified output a software product and that involves the creation of source code.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Mathias Brochhausen</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<obo:IAO_0000119>http://en.wikipedia.org/wiki/Software_development</obo:IAO_0000119>
<obo:IAO_0000600 xml:lang="en">A planned process resulting in a software product involving the creation of source code.</obo:IAO_0000600>
<rdfs:label xml:lang="en">software development</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000032 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000032">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000027"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/APOLLO_SV_00000033"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000109"/>
<obo:IAO_0000115 xml:lang="en">A measurement datum that is the output of counting.</obo:IAO_0000115>
<obo:IAO_0000117>Mathias Brochhausen</obo:IAO_0000117>
<obo:IAO_0000600 xml:lang="en">A measurement datum that is the output of counting.</obo:IAO_0000600>
<rdfs:label xml:lang="en">count</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000033 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000033">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000011"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/APOLLO_SV_00000032"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<obo:IAO_0000115 xml:lang="en">The planned process of finding the number of elements in a finite set of objects.</obo:IAO_0000115>
<obo:IAO_0000117>Mathias Brochhausen</obo:IAO_0000117>
<obo:IAO_0000119>http://en.wikipedia.org/wiki/Counting</obo:IAO_0000119>
<obo:IAO_0000600 xml:lang="en">The planned process of finding the number of elements in a finite set of objects.</obo:IAO_0000600>
<rdfs:label xml:lang="en">counting</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000522 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000522">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000310"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000096"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000027"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000136"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000096"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111 xml:lang="en">software source code version control repository</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">A document that comprises at least one source code module and provenance data about who contributed the set of files making up the module(s), and optionally comprises also multiple versions of files with detailed change history about who committed files and when, a license for the software, readme files, documentation, executables, etc.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<rdfs:comment xml:lang="en">Refers to the stuff that lives on GitHub, not to GitHub or the git software on which it is based</rdfs:comment>
<rdfs:label xml:lang="en">source code repository</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000524 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000524">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<rdfs:subClassOf>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000010"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000096"/>
</owl:unionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000010"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</rdfs:subClassOf>
<obo:IAO_0000111 xml:lang="en">process of compiling software</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">A planned process that converts human-written or curated software into a machine-executable or interpretable set of instructions.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<rdfs:comment xml:lang="en">It's compiling "software" (scare quotes) and not "source code" because you can compile Java bytecode to machine code, and Java bytecode is not technically "source code". Compiling source code would be a subclass of this class (as would compiling Java bytecode, etc.).</rdfs:comment>
<rdfs:comment xml:lang="en">Source code can be automatically generated to some extent, but we're assuming humans still curate it minimally. Also, in the case of Java and its JVM, it's machine interpretable instructions, not directly executable. Ditto for other languages with intermediate form like Java byte code.</rdfs:comment>
<rdfs:label xml:lang="en">compiling software</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000796 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000796">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000011"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000100"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<obo:IAO_0000111 xml:lang="en">creating a data set</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">A planned process that has a data set as its specified output.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">data set creation</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">dataset creation</obo:IAO_0000118>
<rdfs:label xml:lang="en">dataset creating</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/BFO_0000001 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000001"/>
<!-- http://purl.obolibrary.org/obo/BFO_0000009 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000009"/>
<!-- http://purl.obolibrary.org/obo/BFO_0000018 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000018"/>
<!-- http://purl.obolibrary.org/obo/BFO_0000023 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000023"/>
<!-- http://purl.obolibrary.org/obo/BFO_0000026 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000026"/>
<!-- http://purl.obolibrary.org/obo/BFO_0000028 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000028"/>
<!-- http://purl.obolibrary.org/obo/BFO_0000040 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000040"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000001 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000001">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000033"/>
<obo:IAO_0000111 xml:lang="en">conditional specification</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A directive information entity that specifies what should happen if the trigger condition is fulfilled.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PlanAndPlannedProcess Branch</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">OBI branch derived</obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">OBI_0000349</obo:IAO_0000119>
<rdfs:label xml:lang="en">conditional specification</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000003 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000003">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000009"/>
<obo:IAO_0000111 xml:lang="en">measurement unit label</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">Examples of measurement unit labels are liters, inches, weight per volume.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">A measurement unit label is as a label that is part of a scalar measurement datum and denotes a unit of measure.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">2009-03-16: provenance: a term measurement unit was
proposed for OBI (OBI_0000176) , edited by Chris Stoeckert and
Cristian Cocos, and subsequently moved to IAO where the objective for
which the original term was defined was satisfied with the definition
of this, different, term.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">2009-03-16: review of this term done during during the OBI workshop winter 2009 and the current definition was considered acceptable for use in OBI. If there is a need to modify this definition please notify OBI.</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">PERSON: Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Melanie Courtot</obo:IAO_0000117>
<rdfs:label xml:lang="en">measurement unit label</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000005 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000005">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000033"/>
<obo:IAO_0000111 xml:lang="en">objective specification</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">In the protocol of a ChIP assay the objective specification says to identify protein and DNA interaction.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A directive information entity that describes an intended process endpoint. When part of a plan specification the concretization is realized in a planned process in which the bearer tries to effect the world so that the process endpoint is achieved.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">2009-03-16: original definition when imported from OBI read: "objective is an non realizable information entity which can serve as that proper part of a plan towards which the realization of the plan is directed."</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">2014-03-31: In the example of usage ("In the protocol of a ChIP assay the objective specification says to identify protein and DNA interaction") there is a protocol which is the ChIP assay protocol. In addition to being concretized on paper, the protocol can be concretized as a realizable entity, such as a plan that inheres in a person. The objective specification is the part that says that some protein and DNA interactions are identified. This is a specification of a process endpoint: the boundary in the process before which they are not identified and after which they are. During the realization of the plan, the goal is to get to the point of having the interactions, and participants in the realization of the plan try to do that.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">Answers the question, why did you do this experiment?</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">PERSON: Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Barry Smith</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Bjoern Peters</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Jennifer Fostel</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">goal specification</obo:IAO_0000118>
<obo:IAO_0000119 xml:lang="en">OBI Plan and Planned Process/Roles Branch</obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">OBI_0000217</obo:IAO_0000119>
<rdfs:label xml:lang="en">objective specification</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000006 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000006">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
<obo:IAO_0000111 xml:lang="en">narrative object</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">Examples of narrative objects are reports, journal articles, and patents submission.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">A narrative object is an information content entity that is a set of propositions.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">2009-08-10 Alan Ruttenberg: Larry Hunter suggests that this be obsoleted and replaced by 'textual entity' and 'figure'. Alan restored as there are OBI dependencies and this merits further discussion</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">agree - DENRIE. Issue(alan) do we only mean text? What about a story told by mime. Does music count? (no) what about an oral report. Regarding definition, saying it is a set of propositions means we loose the idea that wording matters. Maybe adjust saying a narrative object has some relationshop to a set of propositions</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">person:Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">OBI_0000013</obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">group:OBI</obo:IAO_0000119>
<rdfs:label xml:lang="en">narrative object</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000007 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000007">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000033"/>
<obo:IAO_0000112 xml:lang="en">Pour the contents of flask 1 into flask 2</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A directive information entity that describes an action the bearer will take.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">OBI Plan and Planned Process branch</obo:IAO_0000119>
<rdfs:label xml:lang="en">action specification</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000009 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000009">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
<obo:IAO_0000111 xml:lang="en">datum label</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">A label is a symbol that is part of some other datum and is used to either partially define the denotation of that datum or to provide a means for identifying the datum as a member of the set of data with the same label</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">http://www.golovchenko.org/cgi-bin/wnsearch?q=label#4n</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">GROUP: IAO</obo:IAO_0000117>
<obo:IAO_0000232>9/22/11 BP: changed the rdfs:label for this class from 'label' to 'datum label' to convey that this class is not intended to cover all kinds of labels (stickers, radiolabels, etc.), and not even all kind of textual labels, but rather the kind of labels occuring in a datum.
</obo:IAO_0000232>
<rdfs:label xml:lang="en">datum label</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000010 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000010">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000104"/>
<obo:IAO_0000111 xml:lang="en">software</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">Software is a plan specification composed of a series of instructions that can be
interpreted by or directly executed by a processing unit.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">see sourceforge tracker discussion at http://sourceforge.net/tracker/index.php?func=detail&aid=1958818&group_id=177891&atid=886178</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">PERSON: Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Bjoern Peters</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">GROUP: OBI</obo:IAO_0000119>
<rdfs:label xml:lang="en">software</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000013 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000013">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000088"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000444"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:allValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000444"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111 xml:lang="en">journal article</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">Examples are articles published in the journals, Nature and Science. The content can often be cited by reference to a paper based encoding, e.g. Authors, Title of article, Journal name, date or year of publication, volume and page number.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A report that is published in a journal.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">OBI_0000159</obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">group:OBI</obo:IAO_0000119>
<rdfs:label xml:lang="en">journal article</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000015 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000015">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000019"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000059"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<obo:IAO_0000111 xml:lang="en">information carrier</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">In the case of a printed paperback novel the physicality of the ink and of the paper form part of the information bearer. The qualities of appearing black and having a certain pattern for the ink and appearing white for the paper form part of the information carrier in this case.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">A quality of an information bearer that imparts the information content</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">12/15/09: There is a concern that some ways that carry information may be processes rather than qualities, such as in a 'delayed wave carrier'.</obo:IAO_0000116>
<obo:IAO_0000116>2014-03-10: We are not certain that all information carriers are qualities. There was a discussion of dropping it.</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">PERSON: Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">Smith, Ceusters, Ruttenberg, 2000 years of philosophy</obo:IAO_0000119>
<rdfs:label xml:lang="en">information carrier</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000017 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000017">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000028"/>
<obo:IAO_0000111 xml:lang="en">model number</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">A model number is an information content entity specifically borne by catalogs, design specifications, advertising materials, inventory systems and similar that is about manufactured objects of the same class. The model number is an alternative term for the class. The manufactered objects may or may not also bear the model number. Model numbers can be encoded in a variety of other information objects, such as bar codes, numerals, or patterns of dots.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">manufactered items may have more than one model number, sometimes by rebranding, or because companies are sold and the products issued new model numbers</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Person: Alan Ruttenberg</obo:IAO_0000117>
<rdfs:label xml:lang="en">model number</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000025 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000025">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000104"/>
<obo:IAO_0000111 xml:lang="en">programming language</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">R, Perl, Java</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A language in which source code is written that is intended to be executed/run by a software interpreter. Programming languages are ways to write instructions that specify what to do, and sometimes, how to do it.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">person:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">person:Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">OBI_0000058</obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">group:OBI</obo:IAO_0000119>
<rdfs:label xml:lang="en">programming language</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000027 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000027">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>