-
Notifications
You must be signed in to change notification settings - Fork 21
/
NAMESPACE
387 lines (386 loc) · 11.5 KB
/
NAMESPACE
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
# Generated by roxygen2: do not edit by hand
S3method("[",bm_list)
S3method("[",bru_like_list)
S3method("[",bru_log)
S3method("[",bru_mapper_collect)
S3method("[",bru_mapper_multi)
S3method("[",comp_simple_list)
S3method("[",component_list)
S3method("ibm_names<-",bru_mapper_collect)
S3method("ibm_names<-",bru_mapper_multi)
S3method(add_mappers,component)
S3method(add_mappers,component_list)
S3method(as.character,bru_log)
S3method(bru_compute_linearisation,bru_like)
S3method(bru_compute_linearisation,bru_like_list)
S3method(bru_compute_linearisation,bru_model)
S3method(bru_compute_linearisation,component)
S3method(bru_get_mapper,inla.rgeneric)
S3method(bru_get_mapper,inla.spde)
S3method(bru_index,bru)
S3method(bru_index,bru_like)
S3method(bru_info,bru)
S3method(bru_info,character)
S3method(bru_like_control_family,bru_like)
S3method(bru_like_control_family,bru_like_list)
S3method(bru_like_inla_family,bru_like)
S3method(bru_like_inla_family,bru_like_list)
S3method(bru_like_list,bru_like)
S3method(bru_like_list,list)
S3method(bru_log,bru)
S3method(bru_log,bru_log)
S3method(bru_log,character)
S3method(bru_log,iinla)
S3method(bru_make_stack,bru_like)
S3method(bru_make_stack,bru_like_list)
S3method(bru_mapper,default)
S3method(bru_mapper,fm_mesh_1d)
S3method(bru_mapper,fm_mesh_2d)
S3method(bru_mapper,inla.mesh)
S3method(bru_mapper,inla.mesh.1d)
S3method(bru_response_size,bru)
S3method(bru_response_size,bru_info)
S3method(bru_response_size,bru_like)
S3method(bru_response_size,bru_like_list)
S3method(bru_timings,bru)
S3method(bru_used,bru)
S3method(bru_used,bru_like)
S3method(bru_used,bru_used)
S3method(bru_used,character)
S3method(bru_used,default)
S3method(bru_used,expression)
S3method(bru_used,formula)
S3method(bru_used,list)
S3method(bru_used_update,bru_like)
S3method(bru_used_update,bru_like_list)
S3method(bru_used_update,bru_used)
S3method(bru_used_vars,character)
S3method(bru_used_vars,expression)
S3method(bru_used_vars,formula)
S3method(c,bm_list)
S3method(c,bru_like)
S3method(c,bru_like_list)
S3method(c,bru_log)
S3method(c,bru_mapper)
S3method(c,component)
S3method(c,component_list)
S3method(comp_lin_eval,component)
S3method(comp_lin_eval,component_list)
S3method(component,character)
S3method(component_list,formula)
S3method(component_list,list)
S3method(eval_spatial,SpatRaster)
S3method(eval_spatial,SpatialGridDataFrame)
S3method(eval_spatial,SpatialPixelsDataFrame)
S3method(eval_spatial,SpatialPolygonsDataFrame)
S3method(eval_spatial,sf)
S3method(eval_spatial,stars)
S3method(evaluate_comp_simple,bru_model)
S3method(evaluate_comp_simple,component_list)
S3method(evaluate_effect_multi_state,comp_simple_list)
S3method(evaluate_effect_multi_state,component_list)
S3method(evaluate_effect_single_state,bru_mapper)
S3method(evaluate_effect_single_state,comp_simple_list)
S3method(evaluate_effect_single_state,component_list)
S3method(format,bru_input)
S3method(format,bru_subcomponent)
S3method(format,bru_used)
S3method(generate,bru)
S3method(gg,RasterLayer)
S3method(gg,SpatRaster)
S3method(gg,SpatialGridDataFrame)
S3method(gg,SpatialLines)
S3method(gg,SpatialPixels)
S3method(gg,SpatialPixelsDataFrame)
S3method(gg,SpatialPoints)
S3method(gg,SpatialPolygons)
S3method(gg,bru_prediction)
S3method(gg,data.frame)
S3method(gg,fm_mesh_1d)
S3method(gg,fm_mesh_2d)
S3method(gg,inla.mesh)
S3method(gg,inla.mesh.1d)
S3method(gg,matrix)
S3method(gg,prediction)
S3method(gg,sf)
S3method(glplot,SpatialLines)
S3method(glplot,SpatialPoints)
S3method(glplot,fm_mesh_2d)
S3method(glplot,inla.mesh)
S3method(ibm_eval,bru_mapper_aggregate)
S3method(ibm_eval,bru_mapper_collect)
S3method(ibm_eval,bru_mapper_const)
S3method(ibm_eval,bru_mapper_logsumexp)
S3method(ibm_eval,bru_mapper_marginal)
S3method(ibm_eval,bru_mapper_multi)
S3method(ibm_eval,bru_mapper_pipe)
S3method(ibm_eval,bru_mapper_scale)
S3method(ibm_eval,bru_mapper_shift)
S3method(ibm_eval,bru_mapper_taylor)
S3method(ibm_eval,default)
S3method(ibm_eval2,bru_mapper_pipe)
S3method(ibm_eval2,default)
S3method(ibm_inla_subset,default)
S3method(ibm_invalid_output,bru_mapper_collect)
S3method(ibm_invalid_output,bru_mapper_index)
S3method(ibm_invalid_output,bru_mapper_multi)
S3method(ibm_invalid_output,default)
S3method(ibm_is_linear,bru_mapper_collect)
S3method(ibm_is_linear,bru_mapper_multi)
S3method(ibm_is_linear,default)
S3method(ibm_jacobian,bru_mapper_aggregate)
S3method(ibm_jacobian,bru_mapper_collect)
S3method(ibm_jacobian,bru_mapper_const)
S3method(ibm_jacobian,bru_mapper_factor)
S3method(ibm_jacobian,bru_mapper_fm_mesh_1d)
S3method(ibm_jacobian,bru_mapper_fm_mesh_2d)
S3method(ibm_jacobian,bru_mapper_harmonics)
S3method(ibm_jacobian,bru_mapper_index)
S3method(ibm_jacobian,bru_mapper_inla_mesh_1d)
S3method(ibm_jacobian,bru_mapper_inla_mesh_2d)
S3method(ibm_jacobian,bru_mapper_linear)
S3method(ibm_jacobian,bru_mapper_logsumexp)
S3method(ibm_jacobian,bru_mapper_marginal)
S3method(ibm_jacobian,bru_mapper_matrix)
S3method(ibm_jacobian,bru_mapper_mesh_B)
S3method(ibm_jacobian,bru_mapper_multi)
S3method(ibm_jacobian,bru_mapper_pipe)
S3method(ibm_jacobian,bru_mapper_scale)
S3method(ibm_jacobian,bru_mapper_shift)
S3method(ibm_jacobian,bru_mapper_taylor)
S3method(ibm_jacobian,default)
S3method(ibm_linear,bru_mapper_collect)
S3method(ibm_linear,bru_mapper_multi)
S3method(ibm_linear,default)
S3method(ibm_n,bru_mapper_aggregate)
S3method(ibm_n,bru_mapper_collect)
S3method(ibm_n,bru_mapper_const)
S3method(ibm_n,bru_mapper_factor)
S3method(ibm_n,bru_mapper_fm_mesh_1d)
S3method(ibm_n,bru_mapper_fm_mesh_2d)
S3method(ibm_n,bru_mapper_harmonics)
S3method(ibm_n,bru_mapper_inla_mesh_1d)
S3method(ibm_n,bru_mapper_inla_mesh_2d)
S3method(ibm_n,bru_mapper_linear)
S3method(ibm_n,bru_mapper_marginal)
S3method(ibm_n,bru_mapper_matrix)
S3method(ibm_n,bru_mapper_mesh_B)
S3method(ibm_n,bru_mapper_multi)
S3method(ibm_n,bru_mapper_pipe)
S3method(ibm_n,bru_mapper_scale)
S3method(ibm_n,bru_mapper_shift)
S3method(ibm_n,bru_mapper_taylor)
S3method(ibm_n,default)
S3method(ibm_n_output,bru_mapper_aggregate)
S3method(ibm_n_output,bru_mapper_collect)
S3method(ibm_n_output,bru_mapper_marginal)
S3method(ibm_n_output,bru_mapper_multi)
S3method(ibm_n_output,bru_mapper_pipe)
S3method(ibm_n_output,bru_mapper_scale)
S3method(ibm_n_output,bru_mapper_shift)
S3method(ibm_n_output,bru_mapper_taylor)
S3method(ibm_n_output,default)
S3method(ibm_names,bru_mapper_collect)
S3method(ibm_names,bru_mapper_multi)
S3method(ibm_names,default)
S3method(ibm_simplify,bru_mapper_pipe)
S3method(ibm_simplify,default)
S3method(ibm_values,bru_mapper_aggregate)
S3method(ibm_values,bru_mapper_collect)
S3method(ibm_values,bru_mapper_const)
S3method(ibm_values,bru_mapper_factor)
S3method(ibm_values,bru_mapper_fm_mesh_1d)
S3method(ibm_values,bru_mapper_fm_mesh_2d)
S3method(ibm_values,bru_mapper_inla_mesh_1d)
S3method(ibm_values,bru_mapper_inla_mesh_2d)
S3method(ibm_values,bru_mapper_linear)
S3method(ibm_values,bru_mapper_marginal)
S3method(ibm_values,bru_mapper_matrix)
S3method(ibm_values,bru_mapper_mesh_B)
S3method(ibm_values,bru_mapper_multi)
S3method(ibm_values,bru_mapper_pipe)
S3method(ibm_values,bru_mapper_scale)
S3method(ibm_values,bru_mapper_shift)
S3method(ibm_values,bru_mapper_taylor)
S3method(ibm_values,default)
S3method(index_eval,component)
S3method(index_eval,component_list)
S3method(inla_subset_eval,component_list)
S3method(input_eval,bru_input)
S3method(input_eval,component)
S3method(input_eval,component_list)
S3method(length,bru_log)
S3method(plot,bru)
S3method(plot,bru_prediction)
S3method(plot,prediction)
S3method(predict,bru)
S3method(print,bru)
S3method(print,bru_info)
S3method(print,bru_input)
S3method(print,bru_like)
S3method(print,bru_like_list)
S3method(print,bru_log)
S3method(print,bru_mapper)
S3method(print,bru_subcomponent)
S3method(print,bru_used)
S3method(print,component)
S3method(print,component_list)
S3method(print,summary_bru)
S3method(print,summary_bru_info)
S3method(print,summary_bru_input)
S3method(print,summary_bru_like)
S3method(print,summary_bru_like_list)
S3method(print,summary_bru_mapper)
S3method(print,summary_bru_model)
S3method(print,summary_bru_options)
S3method(print,summary_bru_subcomponent)
S3method(print,summary_component)
S3method(print,summary_component_list)
S3method(summary,bru)
S3method(summary,bru_info)
S3method(summary,bru_input)
S3method(summary,bru_like)
S3method(summary,bru_like_list)
S3method(summary,bru_mapper)
S3method(summary,bru_mapper_collect)
S3method(summary,bru_mapper_multi)
S3method(summary,bru_mapper_pipe)
S3method(summary,bru_model)
S3method(summary,bru_options)
S3method(summary,bru_subcomponent)
S3method(summary,bru_used)
S3method(summary,component)
S3method(summary,component_list)
export("ibm_names<-")
export(add_mappers)
export(as.bru_options)
export(bincount)
export(bru)
export(bru_call_options)
export(bru_compute_linearisation)
export(bru_convergence_plot)
export(bru_fill_missing)
export(bru_forward_transformation)
export(bru_get_mapper)
export(bru_get_mapper_safely)
export(bru_index)
export(bru_info)
export(bru_inla.stack.mexpand)
export(bru_inla.stack.mjoin)
export(bru_inverse_transformation)
export(bru_like_control_family)
export(bru_like_inla_family)
export(bru_like_list)
export(bru_log)
export(bru_log_bookmark)
export(bru_log_bookmarks)
export(bru_log_index)
export(bru_log_message)
export(bru_log_new)
export(bru_log_offset)
export(bru_log_reset)
export(bru_make_stack)
export(bru_mapper)
export(bru_mapper_aggregate)
export(bru_mapper_collect)
export(bru_mapper_const)
export(bru_mapper_define)
export(bru_mapper_factor)
export(bru_mapper_harmonics)
export(bru_mapper_index)
export(bru_mapper_linear)
export(bru_mapper_logsumexp)
export(bru_mapper_marginal)
export(bru_mapper_matrix)
export(bru_mapper_mesh_B)
export(bru_mapper_multi)
export(bru_mapper_offset)
export(bru_mapper_pipe)
export(bru_mapper_scale)
export(bru_mapper_shift)
export(bru_mapper_taylor)
export(bru_model)
export(bru_options)
export(bru_options_check)
export(bru_options_default)
export(bru_options_get)
export(bru_options_reset)
export(bru_options_set)
export(bru_rerun)
export(bru_response_size)
export(bru_safe_inla)
export(bru_safe_sp)
export(bru_standardise_names)
export(bru_summarise)
export(bru_timings)
export(bru_timings_plot)
export(bru_used)
export(bru_used_update)
export(bru_used_vars)
export(comp_lin_eval)
export(component)
export(component_list)
export(deltaIC)
export(devel.cvmeasure)
export(eval_spatial)
export(evaluate_comp_simple)
export(evaluate_effect_multi_state)
export(evaluate_effect_single_state)
export(evaluate_model)
export(evaluate_state)
export(generate)
export(gg)
export(globe)
export(glplot)
export(gmap)
export(gorillas_sf_gcov)
export(gorillas_sp)
export(ibm_eval)
export(ibm_eval2)
export(ibm_inla_subset)
export(ibm_invalid_output)
export(ibm_is_linear)
export(ibm_jacobian)
export(ibm_linear)
export(ibm_n)
export(ibm_n_output)
export(ibm_names)
export(ibm_simplify)
export(ibm_values)
export(iinla)
export(index_eval)
export(inla.spde2.pcmatern_B)
export(inla_subset_eval)
export(input_eval)
export(is.inside)
export(lgcp)
export(like)
export(local_basic_fixed_effect_testdata)
export(local_basic_intercept_testdata)
export(local_bru_options_set)
export(local_bru_safe_inla)
export(local_bru_testthat_assign)
export(local_bru_testthat_setup)
export(local_bru_testthat_tolerances)
export(make_hierarchical_mesh_basis)
export(mexdolphin_sp)
export(multiplot)
export(plotmarginal.inla)
export(plotsample)
export(point2count)
export(row_kron)
export(sample.lgcp)
export(sline)
export(spatial.to.ppp)
export(spde.posterior)
export(spoly)
import(fmesher)
import(methods)
import(stats)
importFrom(Matrix,diag)
importFrom(graphics,hist)
importFrom(lifecycle,deprecated)
importFrom(magrittr,"%>%")
importFrom(rlang,.data)
importFrom(rlang,.env)
importFrom(utils,modifyList)