reverse_dependency.yml

on: workflow_dispatch

name: Reverse-deps-check

jobs:
  Reverse-deps-check:
    runs-on: ${{ matrix.config.os }}

    name: ${{ matrix.config.os }} (${{ matrix.config.r }})

    strategy:
      fail-fast: false
      matrix:
        config:
          - {os: macOS-latest, r: 'release'}

    env:
      GITHUB_PAT: ${{ secrets.GH_TOKEN }}
      R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
      RSPM: ${{ matrix.config.rspm }}
      CDM5_ORACLE_CDM_SCHEMA: ${{ secrets.CDM5_ORACLE_CDM_SCHEMA }}
      CDM5_ORACLE_OHDSI_SCHEMA: ${{ secrets.CDM5_ORACLE_OHDSI_SCHEMA }}
      CDM5_ORACLE_PASSWORD: ${{ secrets.CDM5_ORACLE_PASSWORD }}
      CDM5_ORACLE_SERVER: ${{ secrets.CDM5_ORACLE_SERVER }}
      CDM5_ORACLE_USER: ${{ secrets.CDM5_ORACLE_USER }}
      CDM5_POSTGRESQL_CDM_SCHEMA: ${{ secrets.CDM5_POSTGRESQL_CDM_SCHEMA }}
      CDM5_POSTGRESQL_OHDSI_SCHEMA: ${{ secrets.CDM5_POSTGRESQL_OHDSI_SCHEMA }}
      CDM5_POSTGRESQL_PASSWORD: ${{ secrets.CDM5_POSTGRESQL_PASSWORD }}
      CDM5_POSTGRESQL_SERVER: ${{ secrets.CDM5_POSTGRESQL_SERVER }}
      CDM5_POSTGRESQL_USER: ${{ secrets.CDM5_POSTGRESQL_USER }}
      CDM5_SQL_SERVER_CDM_SCHEMA: ${{ secrets.CDM5_SQL_SERVER_CDM_SCHEMA }}
      CDM5_SQL_SERVER_OHDSI_SCHEMA: ${{ secrets.CDM5_SQL_SERVER_OHDSI_SCHEMA }}
      CDM5_SQL_SERVER_PASSWORD: ${{ secrets.CDM5_SQL_SERVER_PASSWORD }}
      CDM5_SQL_SERVER_SERVER: ${{ secrets.CDM5_SQL_SERVER_SERVER }}
      CDM5_SQL_SERVER_USER: ${{ secrets.CDM5_SQL_SERVER_USER }}

    steps:
      - uses: actions/checkout@v2

      - uses: r-lib/actions/setup-r@v2
        with:
          r-version: ${{ matrix.config.r }}

      - uses: r-lib/actions/setup-tinytex@v2

      - uses: r-lib/actions/setup-pandoc@v2
      
      - name: Install system requirements
        if: runner.os == 'Linux'
        run: |
          sudo apt-get install -y make
          sudo apt-get install -y default-jdk
          sudo apt-get install -y libcurl4-openssl-dev
          sudo apt-get install -y libssl-dev

       
      - uses: r-lib/actions/setup-r-dependencies@v2
        with:
          extra-packages: |
            any::rcmdcheck 
            any::remotes
          needs: check
        
      - name: Install main package develop version
        run: |
          remotes::install_local(build_opts = c("--no-resave-data", "--no-manual", "--no-build-vignettes", "--no-multiarch"))
        shell: Rscript {0}
      
      - name: Get reverse dependencies script
        run: |
          utils::download.file("https://raw.githubusercontent.com/OHDSI/.github/main/ReverseDependencyCheckFunctions.R", "ReverseDependencyCheckFunctions.R", method = "curl")
        shell: Rscript {0}
      
      - name: Install reverse dependencies
        run: |
          source("ReverseDependencyCheckFunctions.R")
          saveRDS(prepareForReverseDependencyCheck(), ".github/reverseDependencies.rds")
        shell: Rscript {0}

      - name: Check reverse dependencies
        run: |
          source("ReverseDependencyCheckFunctions.R")
          reverseDependencies <- readRDS(".github/reverseDependencies.rds")
          if (nrow(reverseDependencies) > 0)
            for (i in 1:nrow(reverseDependencies))
              checkPackage(package = reverseDependencies$name[i], inCran = reverseDependencies$inCran[i])
        shell: Rscript {0}