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Error in mbWorkflow: Step 7. Generate subdirs and export #15

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sneumann opened this issue Nov 30, 2020 · 0 comments
Open

Error in mbWorkflow: Step 7. Generate subdirs and export #15

sneumann opened this issue Nov 30, 2020 · 0 comments

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@sneumann
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sneumann commented Nov 30, 2020

mbWorkflow: Step 7. Generate subdirs and export
Error in data.frame(..., check.names = FALSE) : 
  arguments imply differing number of rows: 142, 0
Calls: runContributorToMassBankWorkflow ... compileSummary_peaks -> cbind -> cbind -> data.frame

with a traceback

mbWorkflow: Step 7. Generate subdirs and export
Error in data.frame(..., check.names = FALSE) : 
  arguments imply differing number of rows: 142, 0
...
Enter a frame number, or 0 to exit   

 1: source("/usr/local/bin/msp2massbank.r")
...
 5: msp2massbank.r#3936: runContributorToMassBankWorkflow(folder, applyIntensit
 6: msp2massbank.r#2284: compileSummary(mb = mb, folder = folder_parts[[partIdx
 7: msp2massbank.r#1711: compileSummary_peaks(mb, folder)
 8: msp2massbank.r#1674: cbind(dfAttrPeaks[, c("childIdx", "satellite", "low", 
 9: cbind(deparse.level, ...)
10: data.frame(..., check.names = FALSE)

somewhere in

dfAttrPeaks <- cbind(dfAttrPeaks[, c("childIdx", "satellite", "low", "rawOK")], mb@aggregated)

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