github-actions-ubuntu.yml

#name: he
#
#on:
#  push:
#    branches: [main]
#  pull_request:
#    branches: [main]
#
#jobs:
#  build:
#
#    runs-on: ${{ matrix.os }}
#
#    strategy:
#      matrix:
#        os: [ubuntu-latest, macos-latest, windows-latest]
#        python-version: [3.6, 3.7, 3.8, 3.9]
#
#    steps:
#    - uses: actions/checkout@v2
#
#    - name: Set up Python ${{ matrix.python-version }}
#      uses: actions/setup-python@v2
#      with:
#        python-version: ${{ matrix.python-version }}
#
#    - name: Install dependencies
#      run: |
#        python -m pip install --upgrade pip
#        pip install Cython pytest
#
#    - name: Build and test
#      run: |
#        python setup.py build_ext --inplace
#        pytest


name: graphkit-learn

run-name: ${{ github.actor }} is testing graphkit-learn out GitHub Actions 🚀

on: [ push, pull_request ]

jobs:
  CI-Ubuntu:

    runs-on: ${{ matrix.os }}

    strategy:
      matrix:
#        os: [ubuntu-latest, macos-latest, windows-latest]
        os: [ubuntu-latest]
        python-version: ["3.8", "3.9", "3.10"]

    steps:
      - run: echo "🎉 The job was automatically triggered by a ${{ github.event_name }} event."
      - run: echo "🐧 This job is now running on a ${{ runner.os }} server hosted by GitHub!"
      - run: echo "🔎 The name of your branch is ${{ github.ref }} and your repository is ${{ github.repository }}."

      - name: Check out repository code
        uses: actions/checkout@v3

      - run: echo "💡 The ${{ github.repository }} repository has been cloned to the runner."
      - run: echo "🖥️ The workflow is now ready to test your code on the runner."
      - run: echo "🪵 The root directory of the file system is ${{ github.workspace }}."
      - name: List files in the repository
        run: |
          pwd
          ls /
          echo "The files contained in the repository (github.workspace):"
          ls ${{ github.workspace }}
      - run: echo "🍏 This job's status is ${{ job.status }}."

      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v4
        with:
          python-version: ${{ matrix.python-version }}
          cache: 'pip' # caching pip dependencies

      - name: Install dependencies
        run: |
          python -m pip install --upgrade pip
          pip install Cython pytest
          pip install codecov coverage pytest-cov
          sudo apt-get -y install gfortran liblapack-dev
          pip install -r requirements.txt
          pip install wheel

      - name: Build and test
        run: |
          #          python setup.py bdist_wheel
          python setup.py install
          #          pytest -v --cov-config=.coveragerc --cov-report term --cov=gklearn gklearn/tests/ged/
          pytest -v --cov-config=.coveragerc --cov-report term --cov=gklearn gklearn/tests/ --ignore=gklearn/tests/test_median_preimage_generator.py --ignore=gklearn/tests/test_graphkernels.py --ignore=gklearn/tests/ged/test_gedlib.py

      - name: Run code coverage
        run: |
          codecov

#      - name: Publish distribution 📦 to Test PyPI
#        if: matrix.python-version == '3.8' && matrix.os == 'ubuntu-latest'
#        uses: pypa/gh-action-pypi-publish@release/v1
#        with:
#          password: ${{ secrets.TEST_PYPI_API_TOKEN }}
#          repository-url: https://test.pypi.org/legacy/

#      - name: Publish distribution 📦 to PyPI
#        if: matrix.python-version == '3.8' && matrix.os == 'ubuntu-latest'
#        uses: pypa/gh-action-pypi-publish@release/v1
#        with:
#          user: __token__
#          password: ${{ secrets.PYPI_API_TOKEN }}