Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Plot multiple celltypes or genes in a single slice #21

Open
quanc1989 opened this issue Aug 29, 2022 · 2 comments
Open

Plot multiple celltypes or genes in a single slice #21

quanc1989 opened this issue Aug 29, 2022 · 2 comments

Comments

@quanc1989
Copy link

Hi,

I am trying to plot expression of multiple genes or probability of multiple celltypes in a single slice, as provided by celllocation.

notebooks_cell2location_tutorial_48_0

Any suggestions if we want to plot similar images by ST.FeaturePlot or FeatureOverlay?

Thank you!

Quanc

@ludvigla
Copy link
Collaborator

Hi Quanc,

I'm working on a new package (which is not yet public) which will be an include quite a few new features. I will try to include this type of visualization as an option ;-) So keep an eye out for that. I will post a link in this repo once it's made public.
Btw, have your tried HSVOverlay? It can be used to achieve something similar.

Cheers,
Ludvig

@quanc1989
Copy link
Author

Thanks a lot.

Looking forward to your new package.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants