chapter1.tex

\chapter{Introduction}
\label{ch:intro}
\chaptermark{Optional running chapter heading}

Introduction.

A citation \cite{A}. 
Multiple citations \cite{A, B, C}.

\section{Section}
\label{sec:section}

This is a section.  Here's a reference to a different section:
\ref{sec:subsection}.

\subsection{Subsection}
\label{sec:subsection}

This is a subsection.

% \begin{figure}[t]
% \centering
% \includegraphics[width=\textwidth]{figure}
% \makeatletter
% \let\@currsize\normalsize
% \caption{Caption.}
% \label{fig:figure}
% \end{figure}
% 
% \begin{figure}[t]
% \centering
% \begin{tabular}{c c}
% \includegraphics[height=2.5in]{figureA} &
% \includegraphics[width=3in]{figureB}\\
% (A) & (B)
% \end{tabular}
% \makeatletter
% \let\@currsize\normalsize
% \caption{Two figures.}
% \label{fig:twofigures}
% \end{figure}

% currsize is not set in the long table environment, so we need to set it before we set it up.
\makeatletter
\let\@currsize\normalsize
\makeatother

% tabular environments are set to be single-spaced in the  thesis class,  but long tables do not use tabular
% to get around this, set the spacing to single spacing at the start of the long table environment, and set it back to double-spacing at the end of it
\ssp
\begin{longtable}{cc}
\caption[This is what I want to have in the LOT]{This is a caption.} \label{tab:pfams} \\
\hline
A & B \\
\hline
\endfirsthead
\multicolumn{2}{@{}l}{\textbf{Table \thetable} \ldots continued} \\
\hline
A & B \\
\hline
\endhead
a1 & b1 \\
a2 & b2 \\
a3 & b3 \\
a4 & b4 \\
\hline
\end{longtable}
\dsp

\section[Optional table of contents heading]{Section with\\linebreaks in\\the
name}

This is another section.

You can see a diagram in Figure~\todoref{}.

\subsection{Another subsection}

\subsubsection{Subsubsection}

\paragraph{Heading level below subsubsection}
\label{sec:paragraph}

And I quote: 
%
\begin{quote}
La la la.
\end{quote}
%
\noindent No ident after end of quote.  

Another paragraph with a list:
%
\begin{itemize}
  \ssp{} % single-space
  \item Item 1
  %
  \item Item 2
  %
\end{itemize}
%
\noindent Again, we don't indent here.

This fact is true \todocite{}.