PubMed and related NIH literature resources.
- (PubMed)[https://pubmed.ncbi.nlm.nih.gov/]
- (PubTator)[https://www.ncbi.nlm.nih.gov/research/pubtator/]
Pubtator REST API client https://www.ncbi.nlm.nih.gov/CBBresearch/Lu/Demo/tmTools/RESTfulAPIs.html Formats: JSON, PubTator, BioC.
Nomenclatures: Gene : NCBI Gene e.g. https://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&term=145226 Disease : MEDIC (CTD, CTD_diseases.csv) e.g. http://ctdbase.org/basicQuery.go?bqCat=disease&bq=C537775 Chemical : MESH e.g. http://www.nlm.nih.gov/cgi/mesh/2014/MB_cgi?field=uid&term=D000596 Species : NCBI Taxonomy e.g. https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=10090 Mutation : tmVar https://www.ncbi.nlm.nih.gov/CBBresearch/Lu/Demo/PubTator/tutorial/tmVar.html
NOTE that the API does NOT provide keyword search capability like webapp https://www.ncbi.nlm.nih.gov/CBBresearch/Lu/Demo/PubTator/index.cgi