RAxML-HPC2_on_XSEDE_commands.txt

RAxML-HPC2 on XSEDE - Parameters

ascertainment_corr_	lewis
bootstop_	100
bootstrap_seed_	true
bootstrap_seed_val_	12345
convergence_criterion_	false
datatype_	protein
disable_seqcheck_	false
intermediate_treefiles_	false
mesquite_output_	false
mlsearch_	true
more_memory_	false
mulcustom_aa_matrices_	false
no_bfgs_	false
outsuffix_	result
parsimony_seed_val_	12345
printbrlength_	false
prot_matrix_spec_	DAYHOFF
prot_sub_model_	PROTCAT
provide_parsimony_seed_	true
rearrangement_yes_	false
runtime_	1
specify_bootstraps_	true
use_apobootstopping_	false