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clustal.info
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# Input sequences
>NR_102463.1 Oscillatoria acuminata PCC 6304 16S ribosomal RNA, partial sequence
AGTTTGATCCTGGCTCAGGATGAACGCTGGCGGTCTGCTTAACACATGCAAGTCGAACGG
TGAACCCTCGGGTTCATAGTGGCGGACGGGTGAGTAACACGTGAGAATCTGCCTCCAGGT
CGGGGACAACAGTGGGAAACTGCTGCTAATACCCGATGTGCCTACGGGTGAAAGATTAAT
TGCCTGGAGATGAGCTCGCGTCCGATTAGCTAGTTGGTAGAGTAAAAGCCTACCAAGGCG
ACGATCGGTAGCTGGTCTGAGAGGATGAGCAGCCACACTGGGACTGAGACACGGCCCAGA
CTCCTACGGGAGGCAGCAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAAG
ACCGCGTGGGGGATGAAGGCTCTTGGGTTGTAAACCCCTTTTCTCAGGGAAGAATAACTG
ACGGTACCTGAGGAATAAGCATCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGAGG
ATGCAAGCGTTATCCGGAATTATTGGGCGTAAAGCGTTCGTAGGTGGCTGTTCAAGTCTG
CCGTTAAAGACCGGGGCTTAACTCCGGAAAAACTGTGGAAACTGAACAGCTAGAGTATGG
TAGGGGTAAGGGGAATTCCCGGTGTAGCGGTGAAATGCGTAGATATCGGGAAGAACACCG
GTGGCGAAGGCGCCTTACTGGGCCATAACTGACACTGAGGGACGAAAGCTAGGGGAGCGA
AAGGGATTAGATACCCCTGTAGTCCTAGCTGTAAACGATGGATACTAGGTGTTGCCCGTA
TCGACCCGGGCAGTGCCGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTACGCACGCA
AGTGTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGTATGTGGTTTAAT
TCGATGCAACGCGAAGAACCTTACCAGGGCTTGACATGTCCAGAATCTTGGGGAAACCTA
AGAGTGCCTTCGGGAGCTGGAACACAGGTGGTGCATGGCTGTCGTCAGCTCGTGTCGTGA
GATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTCCTTAGTTGCCATCATTAAGTT
GGGCACTTTAGGGAGACTGCCGGTGACAAACCGGAGGAAGGTGGGGATGACGTCAAGTCA
GCATGCCCCTTACGTCCTGGGCTACACACGTACTACAATGGGAAGGACAGAGGGTAGCAA
GCGCGCGAGTGCAAGCCAATCCCATAAACCTTTCCTCAGTTCAGATTGAAGTTTGCAACT
CAACTTCATGAAGGCGGAATCGCTAGTAATCGCAGGTCAGCATACTGCGGTGAATACGTT
CCCGGGCCTTGTACACACCGCCCGTCACACCATGGAAGTTGGCCATGCCCGAAGTCATTA
CCCTAACCGCAAGGAGGGGGATGCCGAAGGCAGGGCTGATGACTGGGGTGAAGTCGTAAC
AAGGTAGCCGTACCGGAAGGTGTGGCTGGATCACCTCCTT
>KT347094.1 Phormidium pseudopriestleyi FRX01 16S ribosomal RNA gene, partial sequence
CGGGGACAACAGTGGGAAACTGCTGCTAATACCCGATGTGCCCAAGGGTGAAAGATTAAT
TGCCTGGAGATGAGCTCGCGTCCGATTAGCTAGTTGGTAGAGTAAAAGCCTACCAAGGCT
CCGATCGGTAGCTGGTCTGAGAGGATGAGCAGTCACACTGGGACTGAGACACGGCCCAGA
CTCCTACGGGAGGCAGCAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAAG
ACCGCGTGGGGGATGAAGGCTCTTGGGTTGTAAACCCCTTTTCTCAGGGAAGAAGAACTG
ACGGTACCTGAGGAATAAGCATCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGAGG
ATGCAAGCGTTATCCGGAATTATTGGGCGTAAAGCGTTCGTAGGTGGCTGTTCAAGTCTG
CCGTTAAAGACCGGGGCTTAACTCCGGAAAAACTGTGGAAACTGAACAGCTAGAGTATGG
TAGGGGTAAGGGGAATTCCTGGTGTAGCGGTGAAATGCGTAGATATCAGGAAGAACACCG
GTGGCGAAGGCGCCTTACTGGGCCATAACTGACACTGAGGGACGAAAGCTAGGGGAGCGA
AAGGGATTAGATACCCCTGTAGTCCTAGCTGTAAACGATGGATACTAGGTGTTGCCCGTA
TCGACCCGGGCAGTGCCGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTACGCACGCA
AGTGTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGTATGTGGTTTAAT
TCGATGCAACGCGAAGAACCTTACCAGGGCTTGACATGTCCAGAATCTCGGGGAAACCTG
AGAGTGCCTTCGGGAGCTGGAACACAGGTGGTGCATGGCTGTCGTCAGCTCGTGTCGTGA
GATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTCCTTAGTTGCCATCATTAAGTT
GGGCACTTTAGGGAGACTGCCGGTGACAA
# Tool Output
Using 8 threads
Read 2 sequences (type: DNA) from clustalo-I20190514-222922-0180-63412090-p2m.sequence
not more sequences (2) than cluster-size (100), turn off mBed
Progressive alignment progress: 100 % (1 out of 1)
Progressive alignment progress done. CPU time: 0.19u 0.05s 00:00:00.24 Elapsed: 00:00:00
Alignment written to clustalo-I20190514-222922-0180-63412090-p2m.clustal_num
# Protocol
Accessed https://www.ebi.ac.uk/Tools/msa/clustalo/ on 5/14/19, selected DNA and pasted sequences.
ClustalW with character counts was the selected tool.
# Percent Identity Matrix - created by Clustal2.1
#
#
1: NR_102463.1 100.00 98.99
2: KT347094.1 98.99 100.00
# Alignment File Output
CLUSTAL O(1.2.4) multiple sequence alignment
NR_102463.1 AGTTTGATCCTGGCTCAGGATGAACGCTGGCGGTCTGCTTAACACATGCAAGTCGAACGG 60
KT347094.1 ------------------------------------------------------------ 0
NR_102463.1 TGAACCCTCGGGTTCATAGTGGCGGACGGGTGAGTAACACGTGAGAATCTGCCTCCAGGT 120
KT347094.1 ------------------------------------------------------------ 0
NR_102463.1 CGGGGACAACAGTGGGAAACTGCTGCTAATACCCGATGTGCCTACGGGTGAAAGATTAAT 180
KT347094.1 CGGGGACAACAGTGGGAAACTGCTGCTAATACCCGATGTGCCCAAGGGTGAAAGATTAAT 60
****************************************** * ***************
NR_102463.1 TGCCTGGAGATGAGCTCGCGTCCGATTAGCTAGTTGGTAGAGTAAAAGCCTACCAAGGCG 240
KT347094.1 TGCCTGGAGATGAGCTCGCGTCCGATTAGCTAGTTGGTAGAGTAAAAGCCTACCAAGGCT 120
***********************************************************
NR_102463.1 ACGATCGGTAGCTGGTCTGAGAGGATGAGCAGCCACACTGGGACTGAGACACGGCCCAGA 300
KT347094.1 CCGATCGGTAGCTGGTCTGAGAGGATGAGCAGTCACACTGGGACTGAGACACGGCCCAGA 180
******************************* ***************************
NR_102463.1 CTCCTACGGGAGGCAGCAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAAG 360
KT347094.1 CTCCTACGGGAGGCAGCAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAAG 240
************************************************************
NR_102463.1 ACCGCGTGGGGGATGAAGGCTCTTGGGTTGTAAACCCCTTTTCTCAGGGAAGAATAACTG 420
KT347094.1 ACCGCGTGGGGGATGAAGGCTCTTGGGTTGTAAACCCCTTTTCTCAGGGAAGAAGAACTG 300
****************************************************** *****
NR_102463.1 ACGGTACCTGAGGAATAAGCATCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGAGG 480
KT347094.1 ACGGTACCTGAGGAATAAGCATCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGAGG 360
************************************************************
NR_102463.1 ATGCAAGCGTTATCCGGAATTATTGGGCGTAAAGCGTTCGTAGGTGGCTGTTCAAGTCTG 540
KT347094.1 ATGCAAGCGTTATCCGGAATTATTGGGCGTAAAGCGTTCGTAGGTGGCTGTTCAAGTCTG 420
************************************************************
NR_102463.1 CCGTTAAAGACCGGGGCTTAACTCCGGAAAAACTGTGGAAACTGAACAGCTAGAGTATGG 600
KT347094.1 CCGTTAAAGACCGGGGCTTAACTCCGGAAAAACTGTGGAAACTGAACAGCTAGAGTATGG 480
************************************************************
NR_102463.1 TAGGGGTAAGGGGAATTCCCGGTGTAGCGGTGAAATGCGTAGATATCGGGAAGAACACCG 660
KT347094.1 TAGGGGTAAGGGGAATTCCTGGTGTAGCGGTGAAATGCGTAGATATCAGGAAGAACACCG 540
******************* *************************** ************
NR_102463.1 GTGGCGAAGGCGCCTTACTGGGCCATAACTGACACTGAGGGACGAAAGCTAGGGGAGCGA 720
KT347094.1 GTGGCGAAGGCGCCTTACTGGGCCATAACTGACACTGAGGGACGAAAGCTAGGGGAGCGA 600
************************************************************
NR_102463.1 AAGGGATTAGATACCCCTGTAGTCCTAGCTGTAAACGATGGATACTAGGTGTTGCCCGTA 780
KT347094.1 AAGGGATTAGATACCCCTGTAGTCCTAGCTGTAAACGATGGATACTAGGTGTTGCCCGTA 660
************************************************************
NR_102463.1 TCGACCCGGGCAGTGCCGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTACGCACGCA 840
KT347094.1 TCGACCCGGGCAGTGCCGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTACGCACGCA 720
************************************************************
NR_102463.1 AGTGTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGTATGTGGTTTAAT 900
KT347094.1 AGTGTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGTATGTGGTTTAAT 780
************************************************************
NR_102463.1 TCGATGCAACGCGAAGAACCTTACCAGGGCTTGACATGTCCAGAATCTTGGGGAAACCTA 960
KT347094.1 TCGATGCAACGCGAAGAACCTTACCAGGGCTTGACATGTCCAGAATCTCGGGGAAACCTG 840
************************************************ **********
NR_102463.1 AGAGTGCCTTCGGGAGCTGGAACACAGGTGGTGCATGGCTGTCGTCAGCTCGTGTCGTGA 1020
KT347094.1 AGAGTGCCTTCGGGAGCTGGAACACAGGTGGTGCATGGCTGTCGTCAGCTCGTGTCGTGA 900
************************************************************
NR_102463.1 GATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTCCTTAGTTGCCATCATTAAGTT 1080
KT347094.1 GATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTCCTTAGTTGCCATCATTAAGTT 960
************************************************************
NR_102463.1 GGGCACTTTAGGGAGACTGCCGGTGACAAACCGGAGGAAGGTGGGGATGACGTCAAGTCA 1140
KT347094.1 GGGCACTTTAGGGAGACTGCCGGTGACAA------------------------------- 989
*****************************
NR_102463.1 GCATGCCCCTTACGTCCTGGGCTACACACGTACTACAATGGGAAGGACAGAGGGTAGCAA 1200
KT347094.1 ------------------------------------------------------------ 989
NR_102463.1 GCGCGCGAGTGCAAGCCAATCCCATAAACCTTTCCTCAGTTCAGATTGAAGTTTGCAACT 1260
KT347094.1 ------------------------------------------------------------ 989
NR_102463.1 CAACTTCATGAAGGCGGAATCGCTAGTAATCGCAGGTCAGCATACTGCGGTGAATACGTT 1320
KT347094.1 ------------------------------------------------------------ 989
NR_102463.1 CCCGGGCCTTGTACACACCGCCCGTCACACCATGGAAGTTGGCCATGCCCGAAGTCATTA 1380
KT347094.1 ------------------------------------------------------------ 989
NR_102463.1 CCCTAACCGCAAGGAGGGGGATGCCGAAGGCAGGGCTGATGACTGGGGTGAAGTCGTAAC 1440
KT347094.1 ------------------------------------------------------------ 989
NR_102463.1 AAGGTAGCCGTACCGGAAGGTGTGGCTGGATCACCTCCTT 1480
KT347094.1 ---------------------------------------- 989