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gophage.yaml
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gophage.yaml
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name: deepgose
channels:
- ursky
- bioconda
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- alsa-lib=1.2.10=hd590300_0
- antlr-python-runtime=4.9.3=pyhd8ed1ab_1
- aria2=1.37.0=h347180d_1
- attr=2.5.1=h166bdaf_1
- blast=2.16.0=h6f7f691_0
- brotli=1.1.0=hd590300_1
- brotli-bin=1.1.0=hd590300_1
- bzip2=1.0.8=hd590300_5
- c-ares=1.27.0=hd590300_0
- ca-certificates=2024.7.4=hbcca054_0
- cairo=1.18.0=h3faef2a_0
- colorama=0.4.6=pyhd8ed1ab_0
- contourpy=1.2.0=py310hd41b1e2_0
- curl=8.7.1=hca28451_0
- cycler=0.12.1=pyhd8ed1ab_0
- dbus=1.13.6=h5008d03_3
- diamond=2.1.8=h43eeafb_0
- entrez-direct=22.4=he881be0_0
- ete3=3.1.3=pyhd8ed1ab_0
- exceptiongroup=1.2.2=pyhd8ed1ab_0
- expat=2.5.0=hcb278e6_1
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=h77eed37_1
- fontconfig=2.14.2=h14ed4e7_0
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- fonttools=4.47.2=py310h2372a71_0
- freetype=2.12.1=h267a509_2
- gawk=5.3.0=ha916aea_0
- gettext=0.21.1=h27087fc_0
- glib=2.78.3=hfc55251_0
- glib-tools=2.78.3=hfc55251_0
- gmp=6.3.0=h59595ed_1
- graphite2=1.3.13=h58526e2_1001
- gst-plugins-base=1.22.9=h8e1006c_0
- gstreamer=1.22.9=h98fc4e7_0
- harfbuzz=8.3.0=h3d44ed6_0
- hhsuite=3.3.0=py310pl5321hc31ed2c_12
- icu=73.2=h59595ed_0
- iniconfig=2.0.0=pyhd8ed1ab_0
- keyutils=1.6.1=h166bdaf_0
- kiwisolver=1.4.5=py310hd41b1e2_1
- krb5=1.21.2=h659d440_0
- lame=3.100=h166bdaf_1003
- lcms2=2.16=hb7c19ff_0
- ld_impl_linux-64=2.40=h41732ed_0
- lerc=4.0.0=h27087fc_0
- libblas=3.9.0=21_linux64_openblas
- libbrotlicommon=1.1.0=hd590300_1
- libbrotlidec=1.1.0=hd590300_1
- libbrotlienc=1.1.0=hd590300_1
- libcap=2.69=h0f662aa_0
- libcblas=3.9.0=21_linux64_openblas
- libclang=15.0.7=default_hb11cfb5_4
- libclang13=15.0.7=default_ha2b6cf4_4
- libcups=2.3.3=h4637d8d_4
- libcurl=8.7.1=hca28451_0
- libdeflate=1.19=hd590300_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=hd590300_2
- libevent=2.1.12=hf998b51_1
- libexpat=2.5.0=hcb278e6_1
- libffi=3.4.2=h7f98852_5
- libflac=1.4.3=h59595ed_0
- libgcc-ng=13.2.0=h807b86a_3
- libgcrypt=1.10.3=hd590300_0
- libgfortran-ng=13.2.0=h69a702a_4
- libgfortran5=13.2.0=ha4646dd_4
- libglib=2.78.3=h783c2da_0
- libgomp=13.2.0=h807b86a_3
- libgpg-error=1.47=h71f35ed_0
- libiconv=1.17=hd590300_2
- libidn2=2.3.7=hd590300_0
- libjpeg-turbo=3.0.0=hd590300_1
- liblapack=3.9.0=21_linux64_openblas
- libllvm15=15.0.7=hb3ce162_4
- libnghttp2=1.58.0=h47da74e_1
- libnsl=2.0.1=hd590300_0
- libogg=1.3.4=h7f98852_1
- libopenblas=0.3.26=pthreads_h413a1c8_0
- libopus=1.3.1=h7f98852_1
- libpng=1.6.39=h753d276_0
- libpq=16.1=h33b98f1_7
- libsndfile=1.2.2=hc60ed4a_1
- libsqlite=3.46.0=hde9e2c9_0
- libssh2=1.11.0=h0841786_0
- libstdcxx-ng=13.2.0=h7e041cc_4
- libsystemd0=255=h3516f8a_0
- libtiff=4.6.0=ha9c0a0a_2
- libunistring=0.9.10=h7f98852_0
- libuuid=2.38.1=h0b41bf4_0
- libvorbis=1.3.7=h9c3ff4c_0
- libwebp-base=1.3.2=hd590300_0
- libxcb=1.15=h0b41bf4_0
- libxcrypt=4.4.36=hd590300_1
- libxkbcommon=1.6.0=hd429924_1
- libxml2=2.12.4=h232c23b_1
- libxslt=1.1.39=h76b75d6_0
- libzlib=1.2.13=hd590300_5
- lxml=5.1.0=py310hcfd0673_0
- lz4-c=1.9.4=hcb278e6_0
- matplotlib=3.9.1=py310hff52083_0
- matplotlib-base=3.9.1=py310h0b1de36_0
- mmseqs2=15.6f452=pl5321h6a68c12_3
- mpfr=4.2.1=h9458935_0
- mpg123=1.32.4=h59595ed_0
- munkres=1.0.7=py_1
- mysql-common=8.0.33=hf1915f5_6
- mysql-libs=8.0.33=hca2cd23_6
- ncbi-vdb=3.1.1=h4ac6f70_1
- ncurses=6.4=h59595ed_2
- nspr=4.35=h27087fc_0
- nss=3.97=h1d7d5a4_0
- obonet=1.0.0=pyh7cba7a3_0
- omegaconf=2.3.0=pyhd8ed1ab_0
- openjpeg=2.5.0=h488ebb8_3
- openssl=3.3.1=h4bc722e_2
- packaging=23.2=pyhd8ed1ab_0
- patsy=0.5.6=pyhd8ed1ab_0
- pcre=8.45=h9c3ff4c_0
- pcre2=10.42=hcad00b1_0
- perl=5.32.1=7_hd590300_perl5
- perl-archive-tar=2.40=pl5321hdfd78af_0
- perl-carp=1.38=pl5321hdfd78af_4
- perl-common-sense=3.75=pl5321hdfd78af_0
- perl-compress-raw-bzip2=2.201=pl5321h87f3376_1
- perl-compress-raw-zlib=2.105=pl5321h87f3376_0
- perl-encode=3.19=pl5321hec16e2b_1
- perl-exporter=5.72=pl5321hdfd78af_2
- perl-exporter-tiny=1.002002=pl5321hdfd78af_0
- perl-extutils-makemaker=7.70=pl5321hd8ed1ab_0
- perl-io-compress=2.201=pl5321hdbdd923_2
- perl-io-zlib=1.14=pl5321hdfd78af_0
- perl-json=4.10=pl5321hdfd78af_0
- perl-json-xs=2.34=pl5321h4ac6f70_6
- perl-list-moreutils=0.430=pl5321hdfd78af_0
- perl-list-moreutils-xs=0.430=pl5321h031d066_2
- perl-parent=0.236=pl5321hdfd78af_2
- perl-pathtools=3.75=pl5321hec16e2b_3
- perl-scalar-list-utils=1.62=pl5321hec16e2b_1
- perl-types-serialiser=1.01=pl5321hdfd78af_0
- pip=23.3.2=pyhd8ed1ab_0
- pixman=0.43.0=h59595ed_0
- pluggy=1.5.0=pyhd8ed1ab_0
- ply=3.11=py_1
- prodigal=2.6.3=h031d066_9
- pthread-stubs=0.4=h36c2ea0_1001
- pulseaudio-client=16.1=hb77b528_5
- pygenomeviz=1.1.0=pyhd8ed1ab_0
- pyparsing=3.1.1=pyhd8ed1ab_0
- pyqt=5.15.9=py310h04931ad_5
- pyqt5-sip=12.12.2=py310hc6cd4ac_5
- pytest=8.3.2=pyhd8ed1ab_0
- python=3.10.13=hd12c33a_1_cpython
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python-tzdata=2024.1=pyhd8ed1ab_0
- python_abi=3.10=4_cp310
- pyyaml=6.0.1=py310h2372a71_1
- qhull=2020.2=h434a139_5
- qt-main=5.15.8=h450f30e_18
- readline=8.2=h8228510_1
- scripting=0.2.4=py_0
- seaborn=0.13.2=hd8ed1ab_2
- seaborn-base=0.13.2=pyhd8ed1ab_2
- setuptools=69.0.3=pyhd8ed1ab_0
- sip=6.7.12=py310hc6cd4ac_0
- six=1.16.0=pyh6c4a22f_0
- statsmodels=0.14.2=py310h261611a_0
- tk=8.6.13=noxft_h4845f30_101
- tmalign=20170708=h1c9e865_6
- toml=0.10.2=pyhd8ed1ab_0
- tomli=2.0.1=pyhd8ed1ab_0
- tornado=6.3.3=py310h2372a71_1
- typing_extensions=4.12.2=pyha770c72_0
- unicodedata2=15.1.0=py310h2372a71_0
- wget=1.20.3=ha35d2d1_1
- wheel=0.42.0=pyhd8ed1ab_0
- xcb-util=0.4.0=hd590300_1
- xcb-util-image=0.4.0=h8ee46fc_1
- xcb-util-keysyms=0.4.0=h8ee46fc_1
- xcb-util-renderutil=0.3.9=hd590300_1
- xcb-util-wm=0.4.1=h8ee46fc_1
- xkeyboard-config=2.40=hd590300_0
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.1.1=hd590300_0
- xorg-libsm=1.2.4=h7391055_0
- xorg-libx11=1.8.7=h8ee46fc_0
- xorg-libxau=1.0.11=hd590300_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xorg-libxext=1.3.4=h0b41bf4_2
- xorg-libxrender=0.9.11=hd590300_0
- xorg-renderproto=0.11.1=h7f98852_1002
- xorg-xextproto=7.3.0=h0b41bf4_1003
- xorg-xf86vidmodeproto=2.3.1=h7f98852_1002
- xorg-xproto=7.0.31=h7f98852_1007
- xz=5.2.6=h166bdaf_0
- yaml=0.2.5=h7f98852_2
- zlib=1.2.13=hd590300_5
- zstd=1.5.5=hfc55251_0
- pip:
- accelerate==0.26.1
- biopython==1.81
- certifi==2023.7.22
- charset-normalizer==3.3.0
- click==8.1.7
- cmake==3.27.7
- einops==0.7.0
- fair-esm==2.0.0
- filelock==3.12.4
- fsspec==2023.9.2
- huggingface-hub==0.20.2
- idna==3.4
- jinja2==3.1.2
- joblib==1.3.2
- lit==17.0.3
- markupsafe==2.1.3
- mpmath==1.3.0
- networkx==3.1
- numpy==1.26.1
- nvidia-cublas-cu11==11.10.3.66
- nvidia-cuda-cupti-cu11==11.7.101
- nvidia-cuda-nvrtc-cu11==11.7.99
- nvidia-cuda-runtime-cu11==11.7.99
- nvidia-cudnn-cu11==8.5.0.96
- nvidia-cufft-cu11==10.9.0.58
- nvidia-curand-cu11==10.2.10.91
- nvidia-cusolver-cu11==11.4.0.1
- nvidia-cusparse-cu11==11.7.4.91
- nvidia-nccl-cu11==2.14.3
- nvidia-nvtx-cu11==11.7.91
- pandas==1.5.0
- pillow==10.1.0
- psutil==5.9.6
- pytz==2023.3.post1
- regex==2023.12.25
- requests==2.31.0
- safetensors==0.4.1
- scikit-learn==1.3.1
- scipy==1.11.3
- sympy==1.12
- threadpoolctl==3.2.0
- tokenizers==0.15.0
- torch==2.0.1
- torchaudio==2.0.2
- torchvision==0.15.2
- tqdm==4.66.1
- transformers==4.36.2
- triton==2.0.0
- typing-extensions==4.8.0
- tzdata==2023.3
- urllib3==2.0.7
- x-transformers==1.27.6
prefix: /home/jiaojguan2/miniconda3/envs/deepgose