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phagenus.yaml
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phagenus.yaml
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name: dlhaplo
channels:
- pytorch
- bioconda
- anaconda
- fastai
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=1_gnu
- absl-py=1.0.0=pyhd8ed1ab_0
- accelerate=0.5.1=py_0
- appdirs=1.4.4=pyhd3eb1b0_0
- argon2-cffi=21.3.0=pyhd3eb1b0_0
- argon2-cffi-bindings=21.2.0=py38h7f8727e_0
- asttokens=2.0.5=pyhd3eb1b0_0
- async-timeout=4.0.2=pyhd8ed1ab_0
- attrs=21.4.0=pyhd3eb1b0_0
- backcall=0.2.0=pyhd3eb1b0_0
- beautifulsoup4=4.11.1=py38h06a4308_0
- biopython=1.79=py38h497a2fe_1
- blas=1.0=mkl
- blast=2.5.0=hc0b0e79_3
- bleach=4.1.0=pyhd3eb1b0_0
- boost=1.70.0=py38h9de70de_1
- boost-cpp=1.70.0=ha2d47e9_1
- bottleneck=1.3.4=py38hce1f21e_0
- bowtie2=2.4.5=py38h72fc82f_0
- brotlipy=0.7.0=py38h0a891b7_1004
- bzip2=1.0.8=h7b6447c_0
- c-ares=1.18.1=h7f98852_0
- ca-certificates=2023.01.10=h06a4308_0
- cffi=1.15.0=py38h3931269_0
- click=8.1.3=py38h578d9bd_0
- colorama=0.4.4=pyh9f0ad1d_0
- cryptography=36.0.0=py38h9ce1e76_0
- cudatoolkit=11.1.1=h6406543_9
- cycler=0.11.0=pyhd3eb1b0_0
- dataclasses=0.8=pyhc8e2a94_3
- dbus=1.13.18=hb2f20db_0
- debugpy=1.5.1=py38h295c915_0
- decorator=5.1.1=pyhd3eb1b0_0
- defusedxml=0.7.1=pyhd3eb1b0_0
- deprecated=1.2.13=pyh6c4a22f_0
- diamond=2.0.8=h56fc30b_0
- einops=0.4.1=pyhd8ed1ab_0
- entrypoints=0.4=py38h06a4308_0
- executing=0.8.3=pyhd3eb1b0_0
- expat=2.4.4=h295c915_0
- ffmpeg=4.3=hf484d3e_0
- fontconfig=2.13.1=h6c09931_0
- freetype=2.11.0=h70c0345_0
- giflib=5.2.1=h7b6447c_0
- glib=2.56.2=hd408876_0
- gmp=6.2.1=h2531618_2
- gnutls=3.6.15=he1e5248_0
- gst-plugins-base=1.14.0=hbbd80ab_1
- gstreamer=1.14.0=hb453b48_1
- huggingface_hub=0.5.1=pyhd8ed1ab_0
- icu=58.2=he6710b0_3
- idna=3.3=pyhd8ed1ab_0
- imbalanced-learn=0.9.0=pyhd8ed1ab_0
- importlib-metadata=4.8.2=py38h578d9bd_0
- importlib_metadata=4.8.2=hd8ed1ab_0
- importlib_resources=5.2.0=pyhd3eb1b0_1
- intel-openmp=2021.4.0=h06a4308_3561
- ipykernel=6.9.1=py38h06a4308_0
- ipython=8.2.0=py38h06a4308_0
- ipython_genutils=0.2.0=pyhd3eb1b0_1
- ipywidgets=7.6.5=pyhd3eb1b0_1
- jedi=0.18.1=py38h06a4308_1
- jinja2=3.0.3=pyhd3eb1b0_0
- joblib=1.1.0=pyhd8ed1ab_0
- jpeg=9d=h7f8727e_0
- jupyter=1.0.0=py38_7
- jupyter_client=7.2.2=py38h06a4308_0
- jupyter_console=6.4.3=pyhd3eb1b0_0
- jupyter_core=4.9.2=py38h06a4308_0
- jupyterlab_pygments=0.1.2=py_0
- jupyterlab_widgets=1.0.0=pyhd3eb1b0_1
- kiwisolver=1.3.2=py38h295c915_0
- lame=3.100=h7b6447c_0
- lcms2=2.12=h3be6417_0
- ld_impl_linux-64=2.36.1=hea4e1c9_2
- libblas=3.9.0=12_linux64_mkl
- libcblas=3.9.0=12_linux64_mkl
- libffi=3.4.2=h7f98852_5
- libgcc-ng=11.2.0=h1d223b6_11
- libgfortran-ng=11.2.0=h69a702a_16
- libgfortran5=11.2.0=h5c6108e_16
- libgomp=11.2.0=h1d223b6_11
- libiconv=1.15=h63c8f33_5
- libidn2=2.3.2=h7f8727e_0
- liblapack=3.9.0=12_linux64_mkl
- libnsl=2.0.0=h7f98852_0
- libpng=1.6.37=hbc83047_0
- libprotobuf=3.19.1=h780b84a_0
- libsodium=1.0.18=h7b6447c_0
- libstdcxx-ng=11.2.0=he4da1e4_11
- libtasn1=4.16.0=h27cfd23_0
- libtiff=4.2.0=h85742a9_0
- libunistring=0.9.10=h27cfd23_0
- libuuid=1.0.3=h7f8727e_2
- libuv=1.42.0=h7f98852_0
- libwebp=1.2.2=h55f646e_0
- libwebp-base=1.2.2=h7f8727e_0
- libxcb=1.14=h7b6447c_0
- libxml2=2.9.12=h03d6c58_0
- libzlib=1.2.11=h36c2ea0_1013
- lightgbm=3.3.2=py38h709712a_0
- lz4-c=1.9.3=h295c915_1
- markdown=3.3.6=pyhd8ed1ab_0
- markupsafe=2.0.1=py38h27cfd23_0
- matplotlib-base=3.2.2=py38hef1b27d_0
- matplotlib-inline=0.1.2=pyhd3eb1b0_2
- mcl=14.137=pl5321hec16e2b_8
- megahit=1.2.9=h2e03b76_1
- mistune=0.8.4=py38h7b6447c_1000
- mkl=2021.4.0=h06a4308_640
- mkl-service=2.4.0=py38h95df7f1_0
- mkl_fft=1.3.1=py38h8666266_1
- mkl_random=1.2.2=py38h1abd341_0
- msgpack-python=1.0.3=py38h43d8883_1
- nbclient=0.5.13=py38h06a4308_0
- nbconvert=6.4.4=py38h06a4308_0
- nbformat=5.3.0=py38h06a4308_0
- ncurses=6.2=h58526e2_4
- nest-asyncio=1.5.5=py38h06a4308_0
- nettle=3.7.3=hbbd107a_1
- notebook=6.4.8=py38h06a4308_0
- numexpr=2.8.1=py38h6abb31d_0
- numpy-base=1.21.2=py38h79a1101_0
- olefile=0.46=pyh9f0ad1d_1
- openh264=2.1.1=h4ff587b_0
- openjdk=8.0.152=h7b6447c_3
- openjpeg=2.4.0=hb52868f_1
- openssl=1.1.1t=h7f8727e_0
- packaging=21.3=pyhd8ed1ab_0
- pandocfilters=1.5.0=pyhd3eb1b0_0
- parso=0.8.3=pyhd3eb1b0_0
- pcre=8.45=h295c915_0
- perl=5.32.1=2_h7f98852_perl5
- pexpect=4.8.0=pyhd3eb1b0_3
- pickleshare=0.7.5=pyhd3eb1b0_1003
- pip=21.3.1=pyhd8ed1ab_0
- pkgutil-resolve-name=1.3.10=py38h06a4308_0
- pooch=1.4.0=pyhd3eb1b0_0
- prodigal=2.6.3=hec16e2b_4
- prometheus_client=0.13.1=pyhd3eb1b0_0
- prompt-toolkit=3.0.20=pyhd3eb1b0_0
- prompt_toolkit=3.0.20=hd3eb1b0_0
- psutil=5.9.1=py38h0a891b7_0
- ptyprocess=0.7.0=pyhd3eb1b0_2
- pure_eval=0.2.2=pyhd3eb1b0_0
- pyaml=21.10.1=pyhd8ed1ab_0
- pycparser=2.21=pyhd8ed1ab_0
- pygments=2.11.2=pyhd3eb1b0_0
- pyopenssl=22.0.0=pyhd8ed1ab_0
- pyqt=5.9.2=py38h05f1152_4
- pyrsistent=0.18.1=py38h0a891b7_1
- pysocks=1.7.1=py38h578d9bd_5
- python=3.8.12=hb7a2778_2_cpython
- python-dateutil=2.8.2=pyhd3eb1b0_0
- python-fastjsonschema=2.15.1=pyhd3eb1b0_0
- python_abi=3.8=2_cp38
- pytorch=1.10.0=py3.8_cuda11.1_cudnn8.0.5_0
- pytorch-mutex=1.0=cuda
- pyyaml=6.0=py38h7f8727e_1
- pyzmq=22.3.0=py38h295c915_2
- qt=5.9.7=h5867ecd_1
- qtconsole=5.3.0=pyhd3eb1b0_0
- qtpy=2.0.1=pyhd3eb1b0_0
- ray-core=1.6.0=py38h295c915_0
- ray-tune=1.6.0=py38h06a4308_0
- readline=8.1=h46c0cb4_0
- redis-py=4.3.1=pyhd8ed1ab_0
- regex=2022.4.24=py38h0a891b7_0
- sacremoses=0.0.49=pyhd8ed1ab_0
- scikit-optimize=0.9.0=pyhd8ed1ab_1
- seaborn=0.11.2=pyhd3eb1b0_0
- send2trash=1.8.0=pyhd3eb1b0_1
- sentencepiece=0.1.96=py38h1fd1430_0
- setproctitle=1.1.10=py38h497a2fe_1004
- setuptools=59.4.0=py38h578d9bd_0
- sip=4.19.25=py38h2531618_0
- six=1.16.0=pyh6c4a22f_0
- soupsieve=2.3.1=pyhd3eb1b0_0
- sqlite=3.37.0=h9cd32fc_0
- sra-tools=2.8.0=0
- stack_data=0.2.0=pyhd3eb1b0_0
- tabulate=0.8.9=pyhd8ed1ab_0
- tbb=2020.3=hfd86e86_0
- tensorboard=1.15.0=py38_0
- tensorboardx=2.5=pyhd8ed1ab_0
- terminado=0.13.1=py38h06a4308_0
- testpath=0.5.0=pyhd3eb1b0_0
- tk=8.6.11=h27826a3_1
- torchvision=0.11.1=py38_cu111
- tornado=6.1=py38h27cfd23_0
- tqdm=4.62.3=pyhd8ed1ab_0
- traitlets=5.1.1=pyhd3eb1b0_0
- trimmomatic=0.39=hdfd78af_2
- tune-sklearn=0.4.1=pyhd8ed1ab_0
- typing-extensions=4.0.1=hd8ed1ab_0
- typing_extensions=4.0.1=pyha770c72_0
- wcwidth=0.2.5=pyhd3eb1b0_0
- webencodings=0.5.1=py38_1
- werkzeug=2.0.1=pyhd8ed1ab_0
- wgsim=1.0=h7132678_5
- wheel=0.37.0=pyhd8ed1ab_1
- widgetsnbextension=3.5.2=py38h06a4308_0
- wrapt=1.14.1=py38h0a891b7_0
- xz=5.2.5=h516909a_1
- yaml=0.2.5=h7b6447c_0
- zeromq=4.3.4=h2531618_0
- zipp=3.6.0=pyhd8ed1ab_0
- zlib=1.2.11=h36c2ea0_1013
- zstd=1.4.9=haebb681_0
- pip:
- aiohttp==3.8.1
- aiohttp-cors==0.7.0
- aiosignal==1.2.0
- bio==1.3.2
- biothings-client==0.2.6
- blessed==1.19.1
- boto3==1.22.4
- botocore==1.25.4
- cachetools==5.1.0
- certifi==2021.10.8
- charset-normalizer==2.0.9
- cloudpickle==2.1.0
- colorful==0.5.4
- distlib==0.3.4
- filelock==3.7.0
- fonttools==4.28.3
- frozenlist==1.3.0
- future==0.18.2
- google-api-core==2.8.1
- google-auth==2.6.6
- googleapis-common-protos==1.56.2
- gpustat==1.0.0b1
- grpcio==1.43.0
- hyperopt==0.2.7
- importlib-resources==5.8.0
- jmespath==1.0.0
- jsonschema==4.5.1
- matplotlib==3.5.0
- multidict==6.0.2
- mygene==3.2.2
- networkx==2.8.2
- numpy==1.22.4
- nvidia-ml-py3==7.352.0
- opencensus==0.9.0
- opencensus-context==0.1.2
- pandas==1.3.4
- pillow==8.4.0
- platformdirs==2.5.2
- protobuf==3.20.1
- py-spy==0.3.12
- py4j==0.10.9.5
- pyasn1==0.4.8
- pyasn1-modules==0.2.8
- pyparsing==3.0.6
- pytz==2021.3
- ray==1.12.1
- requests==2.26.0
- rsa==4.8
- s3transfer==0.5.2
- scikit-learn==1.0.1
- scipy==1.7.3
- setuptools-scm==6.3.2
- sklearn==0.0
- smart-open==6.0.0
- threadpoolctl==3.0.0
- tokenizers==0.5.0
- tomli==1.2.2
- transformers==2.5.0
- urllib3==1.26.7
- virtualenv==20.14.1
- yarl==1.7.2
prefix: /home/jiaojguan2/miniconda3/envs/dlhaplo