I only need the information of seqname and group columns in the final-viral-boundary.tsv file,Is there any way to speed things up?

[qkqk-hub]

Hello, I only need the information of seqname and group columns in the final-viral-boundary.tsv file. What parameters can I use to make virsorter2 run faster?

My fasta file size is 20G, and I find that most of my time is spent on the second step :

Thank you for your answer！

[jiarong]

Hi,
sorry, I did not notice this issue till now... There is no way to speed up in your case. Also note that the virus group assignment is not reliable if there are no gene detected in the "hallmark" column.