HTScodecs submodule commit does not exist

[fwip]

When cloning from source, the referenced version of htscodecs (d08a84db103c1cc460af8cded0c76987e8ed591d) does not seem to be publicly available.

$ git submodule update --init
error: Server does not allow request for unadvertised object d08a84db103c1cc460af8cded0c76987e8ed591d
Fetched in submodule path 'htscodecs', but it did not contain d08a84db103c1cc460af8cded0c76987e8ed591d. Direct fetching of that commit failed.

I did cd htscodecs ; git checkout master ; cd .. to workaround this issue for now, but I don't know what the "right" version is to use with the current version of io_lib.

Thank you for all your work on this software, and let me know if I can be of any help with regards to this issue.

[jkbonfield]

Thanks for the bug report. I'm not sure how I ended up with that commit hash in there. I bumped it to the current master which is sufficient.

I do have some other fixes to go in to htscodecs, but it's premature to be pointing io_lib to that version other than within my more experimental branches (eg CRAM4b).

[fwip]

Thanks!