Providing missing files and files inconsistency

[OziLeung]

Hi there!

First of all, I'd like to thank you for developing this tool. I am working on the PBMC_to_PBMC sciPENN.ipynb and trying to follow each steps , however, I can't find two files cd8features.csv and colors_pbmctypes.csv, I am wondering where can I get those files. I have searched inside the UPenn box https://upenn.app.box.com/s/1p1f1gblge3rqgk97ztr4daagt4fsue5/folder/144848535142 but I can't find any. Thank you so much and appreciate that.

Also, I am wondering why the UPenn box pbmc/pbmc_gene.h5ad and the pbmc_protein.h5ad different from the datasets inside the goggle drive sciPENN_tutorial?

#the features for CD8
feature_info = pd.read_csv('cd8features.csv')
#the color code and the pbmc cell types file
color_keys = np.unique(tmp_protein.obs['celltype.l3'].values)
color_map = {key: val for key, val in zip(color_keys, pd.read_csv("colors_pbmctypes.csv").iloc[:, 1])}