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Version 0.2.2

I was asked to fix two notes that occurred on the CRAN checks.

Fixes

  • Fixed error within random_steps.brusted_track_xyt(), when burst_id did not start with 1.
  • Removed as_move().
  • Fixed documentation (requested by CRAN)
  • Fixed issue in make_trast() (reported by joshcullen; #105)
  • Fixed issue lonlat=TRUE when calculating step lengths (#103, #107, #108)

Test environments

  • local: macOS Sonoma 14.4 (R 4.3.2)
  • Win-builder: windows-latest (release and devel)
  • R-hub: rhub::check_cran_submission()

R CMD check results

There were no errors, warnings or notes locally and with win-builder.

There were two notes on rhub:

* checking for non-standard things in the check directory ... NOTE
   Found the following files/directories:
     ''NULL''
* checking for detritus in the temp directory ... NOTE
   Found the following files/directories:
     'lastMiKTeXException'

The first notes seems to be caused by r-hub: https://stackoverflow.com/questions/76317685/found-the-following-files-directories-null-when-i-run-devtoolscheck-rhub

Version 0.2.1

This is a minor update and fixes a bug that was introduced with the last update.

Fixes

  • The correct step id is now given in random_steps.brusted_track_xyt().

Test environments

  • local: Ubuntu 22.04, R 4.2.2
  • Win-builder: windows-latest (release and devel)
  • R-cmd-check on gitHub: macOS-latest, windows-latest (release), ubuntu-latest (release)

R CMD check results

There were no errors, warnings or notes.

Version 0.2.0

Round 1

updates

  • Removed dependency on Rccp, all code is now in R.
  • extract_covariates() no longer accepts a buffer.
  • Updated time_of_day() to use suncalc instead of maptools.
  • Updated hr_overlap() from raster to terra.
  • Updated od() and hr_od() from raster to terra.
  • Updated hr_isopleths() from raster/sp to terra/sf.
  • hr_cud() updated from raster to terra.
  • extrackt_covariates*() updated from raster to terra.
  • distance_to_center() was removed.
  • Updated step, it now uses sf::st_distance() instead of raster::distance().
  • Dependency on raster, sp, rgeos and spdep were removed.
  • as_sp() is now as_sf() and replaced the function call in the whole package.
  • Rewrite parts of hr_akde() to use terra instead of raster.
  • Rewrite parts of hr_locoh() to use sf instead of rgeos.

Fixes

  • Fixed error in ta_correlation() reported by Ines Khazar.

Test environments

  • local: Ubuntu 22.04, R 4.2.2
  • Win-builder: windows-latest (release and devel)
  • R-cmd-check on gitHub: macOS-latest, windows-latest (release), ubuntu-latest (release)

R CMD check results

There were no errors, warnings or notes.

Version 0.1.7

Round 1

I was asked to fix warnings that occured on one specific test environment:

checking whether package ‘amt’ can be installed ... [38s/38s] WARNING Found the following significant warnings: Warning: multiple methods tables found for ‘direction’ Warning: multiple methods tables found for ‘gridDistance’

using platform: x86_64-apple-darwin17.0 (64-bit) [https://www.r-project.org/nosvn/R.check/r-release-macos-x86_64/amt-00check.html]

It seems that this issue is resolved, if packages raster and terra are newly installed, this was suggested by Roger Bivand here: https://stackoverflow.com/questions/70674136/r-package-warning-multiple-methods-tables-found-for-direction/70716776#70716776

I also fixed warnings that occurred within \donttest{}.

Test environments

  • local: Ubuntu 20.04, R 4.1.2
  • R-cmd-check on gitHub: macOS-latest, windows-latest (release), ubuntu-latest (release, devel, oldrel-1)
  • AppVeyor on GitHub
  • macos-highsierra-release-cran on r-hub.

R CMD check results

There were no errors, warnings or notes.

Version 0.1.6

Round 1

Test environments

  • local: Ubuntu 20.04, R 4.1.2
  • win builder: R release and devel
  • AppVeyor on GitHub

R CMD check results

There were warning no errors, warnings or notes.

Version 0.1.5

Round 2

Test environments

  • local: Ubuntu 20.04, R 4.1.2
  • win builder: R release and devel

R CMD check results

There were no errors or warnings. There was one note.

  1. That the package was archived.

Additional notes

I did major updates to the documentation following suggestions received by Email on the 16th of November. This included adding \value to all Rd files and removing all \dontrun{ }-statements from the examples.

Round 1

Test environments

  • local: Ubuntu 20.04, R 4.1.2
  • win builder: R release and devel

R CMD check results

There were no errors or warnings. There was one note.

  1. That the package was archived.

What changed

  • Removed dependency on the bcpa package.
  • Fixed test errors (Email by B. Ripley on 2021-10-26)
  • support for hnorm and lnorm step-length distributions.
  • support for st_crs for CRS. Major updates for several functions
  • deprecated the function dist_cent.
  • Added as_track for data.frames.
  • Added argument verbose to make_track().
  • Fixed bug with hr_isopleths() for aKDE.
  • Fix issue #48 (#48). Zero step lengths return now NA for direction.

Version 0.1.4

Round 1

Test environments

  • local: Ubuntu 19.10, R 4.0.0
  • win builder: R release and devel
  • travis-ci: R release and devel
  • appveyor
  • macos-highsierra-release-cran on rhub

R CMD check results

There were no errors, warnings or notes.

What changed

  • unnest works for track_xy*
  • Major updates for hr_akde. This includes that now CI are available for
  • new vignette and methods for hr_overlap
  • reduced package dependencies.
  • Fixed bug in confidence calculation for log_rss.

Version 0.1.3

Round 1

Test environments

  • local: Ubuntu 19.10, R 4.0.0
  • win builder: release and devel
  • travis-ci: release and devel
  • appveyor
  • macos-highsierra-release-cran on rhub

R CMD check results

There were no errors or warnings. On some platforms I received a note indicating that I have to many imports from non-default packages (local check).

What changed

  • hr_overlap gained two new arguments labels and consecutive.only.
  • log_rss new CI
  • I was asked to move Rdpack to imports.
  • group_by for random points works as expected.

Version 0.1.2

Round 1

Test environments

  • local: Ubuntu 19.10, R 4.0.0
  • win builder: release and devel
  • travis-ci: release
  • appveyor
  • macos-highsierra-release-cran on rhub

R CMD check results

There were no errors or warnings. On some platforms I received a note indicating that I have to many imports from non-default packages (local check).

What changed

  • hr_mcp gained an argument keep.data
  • as_track can now convert steps_xyt back to a track_xyt
  • plot function for home ranges improved
  • Ported function for site_fidelity from package rhr.
  • Changed test in order to be compatible with the new dplyr version.

Version 0.1.1

Round 1

Test environments

  • local: Ubuntu 18.04.2 LTS, R 3.6.3
  • win builder: release (devel was not available)
  • travis-ci: release and devel
  • appveyor
  • macos-highsierra-release-cran on rhub

R CMD check results

There were no errors or warnings. On some platforms I received a note indicating that I have to many imports from non-default packages. I will reduce the number of imports in futur versions of the amt package.

What changed

bug fixes

  • Fixed issues for CRAN submission of version 0.1.0, in particular imports and tests.

Version 0.1.0

Round 2

The unit tests gave an error for MacOS. I was asked by Prof. B. Ripley to resolve these.

I this and tested the package again with

rhub::check(platform = "macos-highsierra-release-cran")

There were no errors warnings or notes.

Round 1

Test environments

  • local: Ubuntu 18.04.2 LTS, R 3.6.3
  • win builder: release and devel
  • travis-ci: release and devel
  • appveyor

R CMD check results

There were no errors, warnings or notes

What changed

bug fixes

  • random_steps uses abs direction as reference instead of relative direction

updates

  • Streamlined home-range methods
  • Added methods for overlaps and intersections of home ranges
  • Added href scaled for KDE

Version 0.0.9.0

Round 2

I was asked to fix the references in the Description to <doi:prefix/suffix> which is now done.

Test environments

  • local: Ubuntu 18.04.2 LTS, R 3.6.3
  • win builder: release and devel
  • travis-ci: release and devel
  • appveyor

There were no errors, warnings or notes.

Round 1

Test environments

  • local: Ubuntu 18.04.2 LTS, R 3.6.3
  • win builder: release and devel
  • travis-ci: release and devel
  • appveyor

What changed

bug fixes

  • extract_covariate now works with new version of tibble for raster stacks.
  • fit_distr for gamma distribution, now replaces 0 step length with min setep- length and informs the user with a message.

minor changes

  • added citation to the description
  • unnamed elements of fitted gamma

major changes

  • replaced testthat with tinytest

R CMD check results

There were no errors or warnings. There was 1 note.

* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Johannes Signer <jsigner@gwdg.de>'

Days since last update: 4

The Description field contains
  <https://doi.org/10.1890/04-0953> and integrated step-selection
  functions <https://doi.org/10.1111/2041-210X.12528>), and simulation of
  <https://doi.org/10.1002/ecs2.1771>.```

Version 0.0.8.0

Round 1

Test envionments

  • local: Ubuntu 18.04.2 LTS, R 3.6.3
  • win builder: release and devel
  • travis-ci: release and devel
  • appveyor

What changed

new features

  • New vignette for RSFs.
  • New functions to calculate RSS.
  • New vignette for interfacing other packages.
  • Added method to interface the move packages.

major changes

  • Improved random_points by addeing methods for track, hr and spatial objects.
  • Adjusted random_steps
  • Removed dependency on velox. This makes extract_covariates_along slower.

R CMD check results

There were no errors or warnings. There was 1 note.

* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Johannes Signer <jsigner@gwdg.de>'

New submission

Package was archived on CRAN

CRAN repository db overrides:
  X-CRAN-Comment: Archived on 2020-03-17 as depends on archived package
    'velox'.

Version 0.0.7.0

Round 1

Test envionments

  • local: Ubuntu 18.04.2 LTS, R 3.6.1
  • win builder
  • travis-ci: release and devel
  • appveyor

What changed

  • I was requested to fix warnings, error that were introduced by updates in the tidyr package.

R CMD check results

There were no errors or warnings.

There was one note using win builder:

* checking CRAN incoming feasibility ... Note_to_CRAN_maintainers
Maintainer: 'Johannes Signer <jsigner@gwdg.de>'

Version 0.0.6.0

Round 1

Test environments

  • local Ubuntu 18.04.2 LTS, R 3.5.2
  • win-builder (devel and release)
  • travis-ci: release and devel
  • appveyor
  • r-hub: fedora-clang-devel

What changed

minor changes

  • Several typos are fixed
  • Updated dependencies to dplyr.

R CMD check results

There were no ERRORs or WARNINGs.

  • There was one NOTE on the fedora-clang-devel plattform:
* checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from:
  ‘Rcpp’ ‘magrittr’
  All declared Imports should be used.

Both packages (Rcpp and magrittr) are used. I export the pipe operator (%>%) from magrittr and use Rcpp for source compiled code.

Downstream dependencies

There are no downstream dependencies.

Version 0.0.5.0

Round 1

Test environments

  • local Ubuntu 16.04.3 LTS, R 3.4.4
  • win-builder (devel and release)

What changed

  • random_steps gained a new distribution for random steps (exponential).
  • bug fix in random_steps
  • new function extract_covariates_along, extracts covariates along a random step.
  • steps gains a new argument: keep_cols in order to keep columns from point when creating steps.
  • simulate_tud: a convenience wrapper arround simulate_ud to simulate transition UDs.
  • Added an alias to mk_track called make_track.
  • mk_track gained a new argument check_duplicates that allows to the user to specify if temporal duplicates should give an error or not.
  • Added hr_kde to calculate Kernel home ranges.
  • steps now uses difftime to calcualte time differences.

minor changes

  • Removed: Depends tidyverse
  • Fixed errors with lubridate::Periods within data_frames

R CMD check results

There were no ERRORs, WARNINGs or NOTEs.

Downstream dependencies

There are no downstream dependencies.

Version 0.0.3.0

Round 1

Test environments

  • local Ubuntu 16.04.3 LTS, R 3.4.3
  • win-builder (devel and release)

What changed

Minor update to fix:

  • Vignette titles
  • Add Rdpack (used for Rdmacros) to suggested packages.

R CMD check results

There were no ERRORs, WARNINGs or NOTEs.

Downstream dependencies

There are no downstream dependencies.

Version 0.0.2.0

Round 1

Test environments

  • local Ubuntu 16.04.3 LTS, R 3.4.3
  • win-builder (devel and release)

R CMD check results

There were no ERRORs or WARNINGs.

There was one NOTE:

* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Johannes Signer <jsigner@gwdg.de>'

New submission

Downstream dependencies

There are no downstream dependencies.

Reviewer comments

Thanks, please write package names and software names in single quotes (e.g. 'amt') in title and description.

Please fix and resubmit.

Round 2

Test environments

  • local Ubuntu 16.04.3 LTS, R 3.4.3
  • win-builder (devel and release)

R CMD check results

There were no ERRORs or WARNINGs.

There was one NOTE:

* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Johannes Signer <jsigner@gwdg.de>'

Response to requests

I adjusted the Description of the package and enclosed amt (the package name) in single quotes.

Downstream dependencies

There are no downstream dependencies.