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All 36 of the mpi subprocesses were still running hours after the ./timeseries script successfully terminated. Log file:
************************************************************
Successfully completed generating variable time-series files
Total Time: 18680.984241962433 seconds
************************************************************
--------------------------------------------------------------------------
A system call failed during shared memory initialization that should
not have. It is likely that your MPI job will now either abort or
experience performance degradation.
Local host: utley.local
System call: unlink(2) /var/folders/rb/z2h_lx454f73ttnwhkkjdk8h0000h3/T//ompi.utley.515/pid.37919/1/vader_segment.utley.515.8ee40001.26
Error: No such file or directory (errno 2)
--------------------------------------------------------------------------
[utley.local:37919] 1 more process has sent help message help-opal-shmem-mmap.txt / sys call fail
[utley.local:37919] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages
All 36 of the mpi subprocesses were still running hours after the ./timeseries script successfully terminated. Log file:
Fix may be
export TMPDIR=/tmp
.This only happened on one machine that I installed this code onto, the other terminated successfully and relinquished the cpu.
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