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The collate function for ntm-profiler doesn't work when one or more of the datasets dont have a match for the 'closest species' and I have had manually delete individual datasets for it to work. Is there a way to get the collate function without have to exclude individual datasets ? Thanks in advance :)
File "/home/simone/miniconda3/envs/ntm-profiler/bin/ntm-profiler", line 355, in <module>
args.func(args)
File "/home/simone/miniconda3/envs/ntm-profiler/bin/ntm-profiler", line 172, in main_collate
ntmp.collate(args)
File "/home/simone/miniconda3/envs/ntm-profiler/lib/python3.8/site-packages/ntm_profiler/output.py", line 209, in collate
closest_seq[s] = "|".join(pp.stringify(data["mash_closest_species"]["prediction"][0].values()))
Value:
list index out of range```
The text was updated successfully, but these errors were encountered:
Hi Jody,
The collate function for ntm-profiler doesn't work when one or more of the datasets dont have a match for the 'closest species' and I have had manually delete individual datasets for it to work. Is there a way to get the collate function without have to exclude individual datasets ? Thanks in advance :)
ntm-profiler error report
Traceback:
Value:
The text was updated successfully, but these errors were encountered: