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NEWS
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CHANGES in VERSION 2.0.0
* use **simona** for semantic similarity calculation
* removed similarity functions for DO and based on overlaps (the count)
-----------------------------
CHANGES in VERSION 1.9.1
* `term_similarity_from_gmt()`: previously forgot to split rows.
-----------------------------
CHANGES in VERSION 1.7.2
* `anno_word_cloud()`: fixed a bug where `exclude_words` is not properly
passed to internal functions.
* `simplifyGOFromMultipleLists()`: fixed a bug where `control` is not
properly passed to internal functions.
* `simplifyGOFromMultipleLists()`: draw barplots which show numbers of signifiant
GO terms in clusters.
-------------------------------
CHANGES in VERSION 1.5.2
* add `keyword_enrichment_from_GO()`
-------------------------------
CHANGES in VERSION 1.5.1
* word cloud supports perform enrichment on keywords
* value_fun in binary_cut() now takes 1-AUC as default
--------------------------------
CHANGES in VERSION 1.1.4
* add `export_to_shiny_app()`
* add `simplifyGOFromMultipleLists()`
--------------------------------
CHANGES in VERSION 1.1.2
* add `anno_word_cloud()` function
---------------------------------
CHANGES in VERSION 0.99.6
* in the clustering, considered when the size of cluster is only 1.
* add `partition_by_kmeanspp()`.
* `col` can be set as a vector of colors.
---------------------------------
CHANGES in VERSION 0.99.4
* support more ontologies.
* support to calculate similarity matrix by gene overlap.
* node partition fun changed to pam
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