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AttributeError: 'NoneType' object has no attribute 'shape' #5

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sxh1136 opened this issue Sep 25, 2020 · 0 comments
Open

AttributeError: 'NoneType' object has no attribute 'shape' #5

sxh1136 opened this issue Sep 25, 2020 · 0 comments

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@sxh1136
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sxh1136 commented Sep 25, 2020

Hi there, I'm trying to run Phamers but i keep getting this error. Any idea how to fix this?

./phamer.py -in /home/ubuntu/aqua_amr/software/PhaMers/phage -data data --debug --equalize_reference  ✔
[2020-09-25 18:09:27,312][INFO][] - Loading data into scoring object...
[2020-09-25 18:09:27,312][INFO][load_data] - Calculating features of: Phage_frag_refseq_post2018.fasta
[2020-09-25 18:10:34,150][INFO][load_data] - Saving features to /home/ubuntu/aqua_amr/software/PhaMers/phage/Phage_frag_refseq_post2018_features.csv...
[2020-09-25 18:10:36,124][DEBUG][screen_by_length] - 8407 of 8411 contigs > 5.00 kbp
Traceback (most recent call last):
File "./phamer.py", line 573, in
scorer.equalize_reference_data()
File "./phamer.py", line 164, in equalize_reference_data
num_positive = self.positive_data.shape[0]
AttributeError: 'NoneType' object has no attribute 'shape'
@sxh1136 sxh1136 closed this as completed Sep 28, 2020
@sxh1136 sxh1136 reopened this Feb 9, 2021
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