SpharmPDMReference.bib

\nocite{*}

@article{styner2006framework,
  title={Framework for the statistical shape analysis of brain structures using SPHARM-PDM},
  author={Styner, Martin and Oguz, Ipek and Xu, Shun and Brechb{\"u}hler, Christian and Pantazis, Dimitrios and Levitt, James J and Shenton, Martha E and Gerig, Guido},
  journal={The insight journal},
  number={1071},
  pages={242},
  year={2006},
  publisher={NIH Public Access}
}

@article{paniagua2011outcome,
  title={Outcome quantification using SPHARM-PDM toolbox in orthognathic surgery},
  author={Paniagua, Beatriz and Cevidanes, Lucia and Zhu, HongTu and Styner, Martin},
  journal={International journal of computer assisted radiology and surgery},
  volume={6},
  number={5},
  pages={617--626},
  year={2011},
  publisher={Springer}
}

@article{paniagua2011clinical,
  title={Clinical application of SPHARM-PDM to quantify temporomandibular joint osteoarthritis},
  author={Paniagua, Beatriz and Cevidanes, Lucia and Walker, David and Zhu, Hongtu and Guo, Ruixin and Styner, Martin},
  journal={Computerized Medical Imaging and Graphics},
  volume={35},
  number={5},
  pages={345--352},
  year={2011},
  publisher={Elsevier}
}

@article{alhadidi20123d,
  title={3D quantification of mandibular asymmetry using the SPHARM-PDM tool box},
  author={AlHadidi, Abeer and Cevidanes, Lucia H and Paniagua, Beatriz and Cook, Richard and Festy, Frederic and Tyndall, Donald},
  journal={International journal of computer assisted radiology and surgery},
  volume={7},
  number={2},
  pages={265--271},
  year={2012},
  publisher={Springer}
}

@article{styner2004boundary,
  title={Boundary and medial shape analysis of the hippocampus in schizophrenia},
  author={Styner, Martin and Lieberman, Jeffrey A and Pantazis, Dimitrios and Gerig, Guido},
  journal={Medical image analysis},
  volume={8},
  number={3},
  pages={197--203},
  year={2004},
  publisher={Elsevier}
}

@inproceedings{paniagua2012combined,
  title={Combined SPHARM-PDM and entropy-based particle systems shape analysis framework},
  author={Paniagua, Beatriz and Bompard, Lucile and Cates, Josh and Whitaker, Ross and Datar, Manasi and Vachet, Clement and Styner, Martin},
  booktitle={Proceedings of SPIE},
  volume={8317},
  pages={83170L},
  year={2012},
  organization={NIH Public Access}
}

@article{cevidanes2010quantification,
  title={Quantification of condylar resorption in temporomandibular joint osteoarthritis},
  author={Cevidanes, LHS and Hajati, A-K and Paniagua, Beatriz and Lim, Pei Feng and Walker, DG and Palconet, G and Nackley, AG and Styner, M and Ludlow, JB and Zhu, Hongtu and others},
  journal={Oral Surgery, Oral Medicine, Oral Pathology, Oral Radiology, and Endodontology},
  volume={110},
  number={1},
  pages={110--117},
  year={2010},
  publisher={Elsevier}
}

@inproceedings{nain2007statistical,
  title={Statistical shape analysis of brain structures using spherical wavelets},
  author={Nain, Delphine and Styner, M and Niethammer, Marc and Levitt, James J and Shenton, Martha Elizabeth and Gerig, Guido and Bobick, A and Tannenbaum, Allen},
  booktitle={Biomedical Imaging: From Nano to Macro, 2007. ISBI 2007. 4th IEEE International Symposium on},
  pages={209--212},
  year={2007},
  organization={IEEE}
}

@article{tae2011hippocampal,
  title={Hippocampal shape deformation in female patients with unremitting major depressive disorder},
  author={Tae, WS and Kim, SS and Lee, KU and Nam, EC and Choi, JW and Park, JI},
  journal={American Journal of Neuroradiology},
  volume={32},
  number={4},
  pages={671--676},
  year={2011},
  publisher={Am Soc Neuroradiology}
}

@article{kim2008surface,
  title={Surface-based vector analysis using heat equation interpolation: a new approach to quantify local hippocampal volume changes},
  author={Kim, Hosung and Besson, Pierre and Colliot, Olivier and Bernasconi, Andrea and Bernasconi, Neda},
  journal={Medical Image Computing and Computer-Assisted Intervention--MICCAI 2008},
  pages={1008--1015},
  year={2008},
  publisher={Springer}
}

@article{kurtek2011parameterization,
  title={Parameterization-invariant shape comparisons of anatomical surfaces},
  author={Kurtek, Sebastian and Klassen, Eric and Ding, Zhaohua and Jacobson, Sandra W and Jacobson, Joseph L and Avison, Malcolm J and Srivastava, Anuj},
  journal={IEEE Transactions on Medical Imaging},
  volume={30},
  number={3},
  pages={849--858},
  year={2011},
  publisher={IEEE}
}

@article{bernhardt2013patterns,
  title={Patterns of subregional mesiotemporal disease progression in temporal lobe epilepsy},
  author={Bernhardt, Boris C and Kim, Hosung and Bernasconi, Neda},
  journal={Neurology},
  volume={81},
  number={21},
  pages={1840--1847},
  year={2013},
  publisher={AAN Enterprises}
}

@article{rasoulian2012group,
  title={Group-wise registration of point sets for statistical shape models},
  author={Rasoulian, Abtin and Rohling, Robert and Abolmaesumi, Purang},
  journal={IEEE transactions on medical imaging},
  volume={31},
  number={11},
  pages={2025--2034},
  year={2012},
  publisher={IEEE}
}

@inproceedings{kurtek2011parameterization,
  title={Parameterization-invariant shape statistics and probabilistic classification of anatomical surfaces},
  author={Kurtek, Sebastian and Klassen, Eric and Ding, Zhaohua and Avison, Malcolm J and Srivastava, Anuj},
  booktitle={Biennial International Conference on Information Processing in Medical Imaging},
  pages={147--158},
  year={2011},
  organization={Springer}
}

@inproceedings{styner2007correspondence,
  title={Correspondence evaluation in local shape analysis and structural subdivision},
  author={Styner, Martin and Xu, Shun and El-Sayed, Mohammed and Gerig, Guido},
  booktitle={Biomedical Imaging: From Nano to Macro, 2007. ISBI 2007. 4th IEEE International Symposium on},
  pages={1192--1195},
  year={2007},
  organization={IEEE}
}

@article{gerardin2009multidimensional,
  title={Multidimensional classification of hippocampal shape features discriminates Alzheimer's disease and mild cognitive impairment from normal aging},
  author={Gerardin, Emilie and Ch{\'e}telat, Ga{\"e}l and Chupin, Marie and Cuingnet, R{\'e}mi and Desgranges, B{\'e}atrice and Kim, Ho-Sung and Niethammer, Marc and Dubois, Bruno and Leh{\'e}ricy, St{\'e}phane and Garnero, Line and others},
  journal={Neuroimage},
  volume={47},
  number={4},
  pages={1476--1486},
  year={2009},
  publisher={Elsevier}
}

@inproceedings{styner2007statistical,
  title={Statistical group differences in anatomical shape analysis using Hotelling T2 metric},
  author={Styner, Martin and Oguz, Ipek and Xu, Shun and Pantazis, Dimitrios and Gerig, Guido},
  booktitle={Medical Imaging},
  pages={65123Z--65123Z},
  year={2007},
  organization={International Society for Optics and Photonics}
}

@article{carriere2014apathy,
  title={Apathy in Parkinson's disease is associated with nucleus accumbens atrophy: a magnetic resonance imaging shape analysis},
  author={Carriere, Nicolas and Besson, Pierre and Dujardin, Kathy and Duhamel, Alain and Defebvre, Luc and Delmaire, Christine and Devos, David},
  journal={Movement Disorders},
  volume={29},
  number={7},
  pages={897--903},
  year={2014},
  publisher={Wiley Online Library}
}

@article{maltbie2012asymmetric,
  title={Asymmetric bias in user guided segmentations of brain structures},
  author={Maltbie, Eric and Bhatt, Kshamta and Paniagua, Beatriz and Smith, Rachel G and Graves, Michael M and Mosconi, Matthew W and Peterson, Sarah and White, Scott and Blocher, Joseph and El-Sayed, Mohammed and others},
  journal={Neuroimage},
  volume={59},
  number={2},
  pages={1315--1323},
  year={2012},
  publisher={Elsevier}
}

@article{nguyen2013use,
  title={Use of shape correspondence analysis to quantify skeletal changes associated with bone-anchored Class III correction},
  author={Nguyen, Tung and Cevidanes, Lucia and Paniagua, Beatriz and Zhu, Hongtu and Koerich, Leonardo and De Clerck, Hugo},
  journal={The Angle Orthodontist},
  volume={84},
  number={2},
  pages={329--336},
  year={2013}
}

@article{kim2013disentangling,
  title={Disentangling hippocampal shape anomalies in epilepsy},
  author={Kim, Hosung and Mansi, Thomas and Bernasconi, Neda},
  journal={Frontiers in neurology},
  volume={4},
  pages={131},
  year={2013},
  publisher={Frontiers}
}

@article{janssen2011regional,
  title={Regional specificity of thalamic volume deficits in male adolescents with early-onset psychosis},
  author={Janssen, Joost and Alem{\'a}n-G{\'o}mez, Yasser and Reig, Santiago and Schnack, Hugo G and Parellada, Mara and Graell, Montserrat and Moreno, Carmen and Moreno, Dolores and Mateos-P{\'e}rez, JM and Udias, JM and others},
  journal={The British Journal of Psychiatry},
  pages={bjp--bp},
  year={2011},
  publisher={RCP}
}

@article{solowij2013alteration,
  title={Alteration to hippocampal shape in cannabis users with and without schizophrenia},
  author={Solowij, Nadia and Walterfang, Mark and Lubman, Dan I and Whittle, Sarah and Lorenzetti, Valentina and Styner, Martin and Velakoulis, Dennis and Pantelis, Christos and Y{\"u}cel, Murat},
  journal={Schizophrenia research},
  volume={143},
  number={1},
  pages={179--184},
  year={2013},
  publisher={Elsevier}
}

@inproceedings{paniagua2013lateral,
  title={Lateral ventricle morphology analysis via mean latitude axis},
  author={Paniagua, Beatriz and Lyall, Amanda and Berger, Jean-Baptiste and Vachet, Clement and Hamer, Robert M and Woolson, Sandra and Lin, Weili and Gilmore, John and Styner, Martin},
  booktitle={SPIE Medical Imaging},
  pages={86720M--86720M},
  year={2013},
  organization={International Society for Optics and Photonics}
}

@article{schilling2013regional,
  title={Regional 3D superimposition to assess temporomandibular joint condylar morphology},
  author={Schilling, Juan and Gomes, LCR and Benavides, E and Nguyen, T and Paniagua, Beatriz and Styner, Martin and Boen, V and Gon{\c{c}}alves, Jo{\~a}o Roberto and Cevidanes, LHS},
  journal={Dentomaxillofacial Radiology},
  volume={43},
  number={1},
  pages={20130273},
  year={2013},
  publisher={The British Institute of Radiology.}
}

@article{bernhardt2012mapping,
  title={Mapping thalamocortical network pathology in temporal lobe epilepsy},
  author={Bernhardt, Boris C and Bernasconi, Neda and Kim, Hosung and Bernasconi, Andrea},
  journal={Neurology},
  volume={78},
  number={2},
  pages={129--136},
  year={2012},
  publisher={AAN Enterprises}
}

@article{sarazin2010amnestic,
  title={The amnestic syndrome of hippocampal type in Alzheimer's disease: an MRI study},
  author={Sarazin, Marie and Chauvir{\'e}, Val{\'e}rie and Gerardin, Emilie and Colliot, Olivier and Kinkingn{\'e}hun, Serge and De Souza, Leonardo Cruz and Hugonot-Diener, Laurence and Garnero, Line and Leh{\'e}ricy, St{\'e}phane and Chupin, Marie and others},
  journal={Journal of Alzheimer's disease},
  volume={22},
  number={1},
  pages={285--294},
  year={2010},
  publisher={IOS Press}
}

@article{de2013one,
  title={One-year assessment of surgical outcomes in Class III patients using cone beam computed tomography},
  author={De Paula, LK and Ruellas, ACO and Paniagua, Beatriz and Styner, M and Turvey, T and Zhu, Hongtu and Wang, J and Cevidanes, LHS},
  journal={International journal of oral and maxillofacial surgery},
  volume={42},
  number={6},
  pages={780--789},
  year={2013},
  publisher={Elsevier}
}

@article{kim2011vertex,
  title={Vertex-wise shape analysis of the hippocampus: disentangling positional differences from volume changes},
  author={Kim, Hosung and Mansi, Tommaso and Bernasconi, Andrea and Bernasconi, Neda},
  journal={Medical image computing and computer-assisted Intervention--MICCAI 2011},
  pages={352--359},
  year={2011},
  publisher={Springer}
}

@article{cevidanes2011three,
  title={Three-dimensional quantification of mandibular asymmetry through cone-beam computerized tomography},
  author={Cevidanes, Lucia HS and Alhadidi, Abeer and Paniagua, Beatriz and Styner, Martin and Ludlow, John and Mol, Andre and Turvey, Timothy and Proffit, William R and Rossouw, Paul Emile},
  journal={Oral Surgery, Oral Medicine, Oral Pathology, Oral Radiology, and Endodontology},
  volume={111},
  number={6},
  pages={757--770},
  year={2011},
  publisher={Elsevier}
}

@inproceedings{paniagua20133d,
  title={3D of brain shape and volume after cranial vault remodeling surgery for craniosynostosis correction in infants},
  author={Paniagua, Beatriz and Emodi, Omri and Hill, Jonathan and Fishbaugh, James and Pimenta, Luiz A and Aylward, Stephen R and Andinet, Enquobahrie and Gerig, Guido and Gilmore, John and Van Aalst, John A and others},
  booktitle={SPIE Medical Imaging},
  pages={86720V--86720V},
  year={2013},
  organization={International Society for Optics and Photonics}
}

@article{standen2014developmental,
  title={Developmental plasticity and the origin of tetrapods},
  author={Standen, Emily M and Du, Trina Y and Larsson, Hans CE},
  journal={Nature},
  volume={513},
  number={7516},
  pages={54--58},
  year={2014},
  publisher={Nature Research}
}

@article{joo2014hippocampal,
  title={Hippocampal substructural vulnerability to sleep disturbance and cognitive impairment in patients with chronic primary insomnia: magnetic resonance imaging morphometry},
  author={Joo, Eun Yeon and Kim, Hosung and Suh, Sooyeon and Hong, Seung Bong},
  journal={Sleep},
  volume={37},
  number={7},
  pages={1189--98},
  year={2014},
  publisher={American Academy of Sleep Medicine}
}

@article{bernhardt2015magnetic,
  title={Magnetic resonance imaging pattern learning in temporal lobe epilepsy: classification and prognostics},
  author={Bernhardt, Boris C and Hong, Seok-Jun and Bernasconi, Andrea and Bernasconi, Neda},
  journal={Annals of neurology},
  volume={77},
  number={3},
  pages={436--446},
  year={2015},
  publisher={Wiley Online Library}
}

@inproceedings{kim2014multivariate,
  title={Multivariate hippocampal subfield analysis of local MRI intensity and volume: application to temporal lobe epilepsy.},
  author={Kim, Hosung and Bernhardt, Boris C and Kulaga-Yoskovitz, Jessie and Caldairou, Benoit and Bernasconi, Andrea and Bernasconi, Neda},
  booktitle={MICCAI (2)},
  pages={170--178},
  year={2014}
}

@article{zhou2010hippocampal,
  title={Hippocampal shape classification using redundancy constrained feature selection},
  author={Zhou, Luping and Wang, Lei and Shen, Chunhua and Barnes, Nick},
  journal={Medical Image Computing and Computer-Assisted Intervention--MICCAI 2010},
  pages={266--273},
  year={2010},
  publisher={Springer}
}

@article{levitt2009shape,
  title={Shape abnormalities of caudate nucleus in schizotypal personality disorder},
  author={Levitt, James J and Styner, Martin and Niethammer, Marc and Bouix, Sylvain and Koo, Min-Seong and Voglmaier, Martina M and Dickey, Chandlee C and Niznikiewicz, Margaret A and Kikinis, Ron and Robert, W McCarley and others},
  journal={Schizophrenia research},
  volume={110},
  number={1},
  pages={127--139},
  year={2009},
  publisher={Elsevier}
}

@article{paniagua2009local,
  title={Local shape analysis using MANCOVA},
  author={Paniagua, B and Styner, M and Macenko, M and Pantazis, D and Niethammer, M},
  journal={Insight J},
  volume={21},
  year={2009}
}

@inproceedings{tu2015skeletal,
  title={Skeletal shape correspondence via entropy minimization},
  author={Tu, Liyun and Styner, Martin and Vicory, Jared and Paniagua, Beatriz and Prieto, Juan Carlos and Yang, Dan and Pizer, Stephen M},
  booktitle={SPIE Medical Imaging},
  pages={94130U--94130U},
  year={2015},
  organization={International Society for Optics and Photonics}
}

@article{looi2010shape,
  title={Shape analysis of the neostriatum in frontotemporal lobar degeneration, Alzheimer's disease, and controls},
  author={Looi, Jeffrey Chee Leong and Walterfang, Mark and Styner, Martin and Svensson, Leif and Lindberg, Olof and {\"O}stberg, Per and Botes, Lisa and {\"O}rndahl, Eva and Chua, Phyllis and Kumar, Rajeev and others},
  journal={Neuroimage},
  volume={51},
  number={3},
  pages={970--986},
  year={2010},
  publisher={Elsevier}
}

@article{bompard2014multivariate,
  title={Multivariate longitudinal shape analysis of human lateral ventricles during the first twenty-four months of life},
  author={Bompard, Lucile and Xu, Shun and Styner, Martin and Paniagua, Beatriz and Ahn, Mihye and Yuan, Ying and Jewells, Valerie and Gao, Wei and Shen, Dinggang and Zhu, Hongtu and others},
  journal={PloS one},
  volume={9},
  number={9},
  pages={e108306},
  year={2014},
  publisher={Public Library of Science}
}

@article{cevidanes2015incorporating,
  title={Incorporating 3-dimensional models in online articles},
  author={Cevidanes, Lucia HS and Ruellas, Antonio CO and Jomier, Julien and Nguyen, Tung and Pieper, Steve and Budin, Francois and Styner, Martin and Paniagua, Beatriz},
  journal={American Journal of Orthodontics and Dentofacial Orthopedics},
  volume={147},
  number={5},
  pages={S195--S204},
  year={2015},
  publisher={Elsevier}
}

@inproceedings{shakeri2014groupwise,
  title={Groupwise shape analysis of the hippocampus using spectral matching},
  author={Shakeri, Mahsa and Lombaert, Herv{\'e} and Lipp{\'e}, Sarah and Kadoury, Samuel},
  booktitle={SPIE Medical Imaging},
  pages={90340W--90340W},
  year={2014},
  organization={International Society for Optics and Photonics}
}

@article{kim2011robust,
  title={Robust surface-based multi-template automated algorithm to segment healthy and pathological hippocampi},
  author={Kim, Hosung and Mansi, Tommaso and Bernasconi, Neda and Bernasconi, Andrea},
  journal={Medical Image Computing and Computer-Assisted Intervention--MICCAI 2011},
  pages={445--453},
  year={2011},
  publisher={Springer}
}

@inproceedings{seo2011laplace,
  title={Laplace-Beltrami eigenfunction expansion of cortical manifolds},
  author={Seo, Seongho and Chung, Moo K},
  booktitle={Biomedical Imaging: From Nano to Macro, 2011 IEEE International Symposium on},
  pages={372--375},
  year={2011},
  organization={IEEE}
}

@article{gao2014shape,
  title={Shape analysis, a field in need of careful validation},
  author={Gao, Yi and Riklin-Raviv, Tammy and Bouix, Sylvain},
  journal={Human brain mapping},
  volume={35},
  number={10},
  pages={4965--4978},
  year={2014},
  publisher={Wiley Online Library}
}

@article{lindberg2012hippocampal,
  title={Hippocampal shape analysis in Alzheimer's disease and frontotemporal lobar degeneration subtypes},
  author={Lindberg, Olof and Walterfang, Mark and Looi, Jeffrey CL and Malykhin, Nikolai and {\"O}stberg, Per and Zandbelt, Bram and Styner, Martin and Paniagua, Beatriz and Velakoulis, Dennis and {\"O}rndahl, Eva and others},
  journal={Journal of Alzheimer's Disease},
  volume={30},
  number={2},
  pages={355--365},
  year={2012},
  publisher={IOS Press}
}

@article{tu2016entropy,
  title={Entropy-based correspondence improvement of interpolated skeletal models},
  author={Tu, Liyun and Vicory, Jared and Elhabian, Shireen and Paniagua, Beatriz and Prieto, Juan Carlos and Damon, James N and Whitaker, Ross and Styner, Martin and Pizer, Stephen M},
  journal={Computer Vision and Image Understanding},
  volume={151},
  pages={72--79},
  year={2016},
  publisher={Elsevier}
}

@inproceedings{gomes2015diagnostic,
  title={Diagnostic index of 3D osteoarthritic changes in TMJ condylar morphology},
  author={Gomes, Liliane R and Gomes, Marcelo and Jung, Bryan and Paniagua, Beatriz and Ruellas, Antonio C and Gon{\c{c}}alves, Jo{\~a}o Roberto and Styner, Martin A and Wolford, Larry and Cevidanes, Lucia},
  booktitle={SPIE Medical Imaging},
  pages={941405--941405},
  year={2015},
  organization={International Society for Optics and Photonics}
}

@article{michonski2012automatic,
  title={Automatic recognition of surface landmarks of anatomical structures of back and posture},
  author={Micho{\'n}ski, Jakub and Glinkowski, Wojciech and Witkowski, Marcin and Sitnik, Robert},
  journal={Journal of biomedical optics},
  volume={17},
  number={5},
  pages={0560151--05601514},
  year={2012},
  publisher={International Society for Optics and Photonics}
}

@inproceedings{kurtek2011classification,
  title={Classification of mathematics deficiency using shape and scale analysis of 3D brain structures},
  author={Kurtek, Sebastian and Klassen, Eric and Gore, John C and Ding, Zhaohua and Srivastava, Anuj},
  booktitle={SPIE Medical Imaging},
  pages={796244--796244},
  year={2011},
  organization={International Society for Optics and Photonics}
}

@inproceedings{zhou2007roi,
  title={ROI constrained statistical surface morphometry},
  author={Zhou, Chunxiao and Park, Denise C and Styner, Martin and Wang, Yongmei Michelle},
  booktitle={Biomedical Imaging: From Nano to Macro, 2007. ISBI 2007. 4th IEEE International Symposium on},
  pages={1212--1215},
  year={2007},
  organization={IEEE}
}

@article{ho2010hippocampal,
  title={Hippocampal volume deficits and shape deformities in young biological relatives of schizophrenia probands},
  author={Ho, Beng-Choon and Magnotta, Vincent},
  journal={Neuroimage},
  volume={49},
  number={4},
  pages={3385--3393},
  year={2010},
  publisher={Elsevier}
}

@article{cevidanes20143d,
  title={3D osteoarthritic changes in TMJ condylar morphology correlates with specific systemic and local biomarkers of disease},
  author={Cevidanes, Lucia HS and Walker, David and Schilling, Juan and Sugai, James and Giannobile, William and Paniagua, Beatriz and Benavides, Erika and Zhu, Hongtu and Marron, J Steve and Jung, Bryan T and others},
  journal={Osteoarthritis and cartilage},
  volume={22},
  number={10},
  pages={1657--1667},
  year={2014},
  publisher={Elsevier}
}

@article{zhou2008hybrid,
  title={Hybrid permutation test with application to surface shape analysis},
  author={Zhou, Chunxiao and Wang, Yongmei Michelle},
  journal={Statistica Sinica},
  pages={1553--1568},
  year={2008},
  publisher={JSTOR}
}

@article{sterling2013striatal,
  title={Striatal shape in Parkinson's disease},
  author={Sterling, Nicholas W and Du, Guangwei and Lewis, Mechelle M and Dimaio, Christopher and Kong, Lan and Eslinger, Paul J and Styner, Martin and Huang, Xuemei},
  journal={Neurobiology of aging},
  volume={34},
  number={11},
  pages={2510--2516},
  year={2013},
  publisher={Elsevier}
}

@article{looi2011shape,
  title={Shape analysis of the neostriatum in subtypes of frontotemporal lobar degeneration: Neuroanatomically significant regional morphologic change},
  author={Looi, Jeffrey Chee Leong and Walterfang, Mark and Styner, Martin and Niethammer, Marc and Svensson, Leif Anders and Lindberg, Olof and {\"O}stberg, Per and Botes, Lisa and {\"O}rndahl, Eva and Chua, Phyllis and others},
  journal={Psychiatry Research: Neuroimaging},
  volume={191},
  number={2},
  pages={98--111},
  year={2011},
  publisher={Elsevier}
}

@article{hyun2014sgpp,
  title={SGPP: spatial Gaussian predictive process models for neuroimaging data},
  author={Hyun, Jung Won and Li, Yimei and Gilmore, John H and Lu, Zhaohua and Styner, Martin and Zhu, Hongtu},
  journal={NeuroImage},
  volume={89},
  pages={70--80},
  year={2014},
  publisher={Elsevier}
}

@article{cevidanes2009condylar,
  title={Condylar resorption in patients with TMD},
  author={Cevidanes, Lucia H and Walker, David G and Styner, Martin and Lim, Pei Feng},
  journal={Craniofacial growth series},
  volume={46},
  pages={147},
  year={2009},
  publisher={NIH Public Access}
}

@article{cevidanes20153d,
  title={3D superimposition and understanding temporomandibular joint arthritis},
  author={Cevidanes, LHS and Gomes, LR and Jung, BT and Gomes, MR and Ruellas, ACO and Goncalves, JR and Schilling, J and Styner, M and Nguyen, T and Kapila, S and others},
  journal={Orthodontics \& craniofacial research},
  volume={18},
  number={S1},
  pages={18--28},
  year={2015},
  publisher={Wiley Online Library}
}

@article{pelaez2011discrimination,
  title={Discrimination of AD and normal subjects from MRI: anatomical versus statistical regions},
  author={Pelaez-Coca, Mariola and Bossa, Matias and Olmos, Salvador and Alzheimer's Disease Neuroimaging Initiative (ADNI and others},
  journal={Neuroscience letters},
  volume={487},
  number={1},
  pages={113--117},
  year={2011},
  publisher={Elsevier}
}

@inproceedings{esmaeilzadeh2012mesial,
  title={Mesial temporal lobe epilepsy lateralization using SPHARM-based features of hippocampus and SVM},
  author={Esmaeilzadeh, Mohammad and Soltanian-Zadeh, Hamid and Jafari-Khouzani, Kourosh},
  booktitle={SPIE Medical Imaging},
  pages={83144H--83144H},
  year={2012},
  organization={International Society for Optics and Photonics}
}

@article{solowij2010alterations,
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  author={Solowij, Nadia and Walterfang, Mark and Respondek, Colleen and Whittle, Sarah and Grenyer, Brin and Lorenzetti, Valentina and Fornito, Alex and Lubman, Dan and Velakoulis, Dennis and Pantelis, Christos and others},
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  publisher={Elsevier}
}

@article{gomes2016cone,
  title={Cone beam computed tomography-based models versus multislice spiral computed tomography-based models for assessing condylar morphology},
  author={Gomes, Liliane Rosas and Gomes, Marcelo Regis and Gon{\c{c}}alves, Jo{\~a}o Roberto and Ruellas, Ant{\^o}nio Carlos O and Wolford, Larry M and Paniagua, Beatriz and Benavides, Erika and Cevidanes, L{\'u}cia Helena Soares},
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  year={2016},
  publisher={Elsevier}
}

@article{du20133d,
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  author={Du, Cheng-Jin and Hawkins, Phillip T and Stephens, Len R and Bretschneider, Till},
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  number={1},
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}

@inproceedings{orasanu2015tensor,
  title={Tensor spectral matching of diffusion weighted images},
  author={Orasanu, E and Melbourne, A and Lorenzi, M and Modat, M and Lombaert, H and Eaton-Rosen, Z and Robertson, NJ and Kendall, GS and Marlow, N and Ourselin, S},
  booktitle={SAMI Conference Proceedings, MIDAS Journal},
  pages={35--44},
  year={2015}
}

@article{looi2014subcortical,
  title={The subcortical connectome: Hubs, spokes and the space between--a vision for further research in neurodegenerative disease},
  author={Looi, Jeffrey CL and Walterfang, Mark and Nilsson, Christer and Power, Brian D and van Westen, Danielle and Velakoulis, Dennis and Wahlund, Lars-Olof and Thompson, Paul M},
  journal={Australian \& New Zealand Journal of Psychiatry},
  volume={48},
  number={4},
  pages={306--309},
  year={2014},
  publisher={Sage Publications Sage UK: London, England}
}

@article{jermyn2012elastic,
  title={Elastic shape matching of parameterized surfaces using square root normal fields},
  author={Jermyn, Ian and Kurtek, Sebastian and Klassen, Eric and Srivastava, Anuj},
  journal={Computer Vision--ECCV 2012},
  pages={804--817},
  year={2012},
  publisher={Springer}
}

@article{xi2013validation,
  title={Validation of a novel semi-automated method for three-dimensional surface rendering of condyles using cone beam computed tomography data},
  author={Xi, T and Van Loon, B and Fudalej, P and Berge, S and Swennen, G and Maal, T},
  journal={International journal of oral and maxillofacial surgery},
  volume={42},
  number={8},
  pages={1023--1029},
  year={2013},
  publisher={Elsevier}
}

@article{kim2012surface,
  title={Surface-based multi-template automated hippocampal segmentation: application to temporal lobe epilepsy},
  author={Kim, Hosung and Mansi, Tommaso and Bernasconi, Neda and Bernasconi, Andrea},
  journal={Medical image analysis},
  volume={16},
  number={7},
  pages={1445--1455},
  year={2012},
  publisher={Elsevier}
}

@article{xi2014novel,
  title={A novel region-growing based semi-automatic segmentation protocol for three-dimensional condylar reconstruction using cone beam computed tomography (CBCT)},
  author={Xi, Tong and Schreurs, Ruud and Heerink, Wout J and Berg{\'e}, Stefaan J and Maal, Thomas JJ},
  journal={PloS one},
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  number={11},
  pages={e111126},
  year={2014},
  publisher={Public Library of Science}
}

@inproceedings{xie2014numerical,
  title={Numerical inversion of SRNFs for efficient elastic shape analysis of star-shaped objects},
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  booktitle={European conference on computer vision},
  pages={485--499},
  year={2014},
  organization={Springer}
}

@inproceedings{olmos2005pca,
  title={PCA-based filtering for hypothesis testing on hippocampus shape differences between schizophrenics and normals},
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  year={2005}
}

@inproceedings{gong2011ventricle,
  title={Ventricle shape analysis for centenarians, elderly subjects, MCI and AD patients},
  author={Gong, Zhaojin and Lu, Jianfeng and Chen, Jia and Wang, Yaping and Yuan, Yixuan and Zhang, Tuo and Guo, Lei and Miller, L Stephen},
  booktitle={International Workshop on Multimodal Brain Image Analysis},
  pages={84--92},
  year={2011},
  organization={Springer}
}

@article{goncalves2013temporomandibular,
  title={Temporomandibular joint condylar changes following maxillomandibular advancement and articular disc repositioning},
  author={Goncalves, Joao Roberto and Wolford, Larry Miller and Cassano, Daniel Serra and Da Porciuncula, Guilherme and Paniagua, Beatriz and Cevidanes, Lucia Helena},
  journal={Journal of Oral and Maxillofacial Surgery},
  volume={71},
  number={10},
  pages={1759--e1},
  year={2013},
  publisher={Elsevier}
}

@article{fu2010framework,
  title={A framework for automatic construction of 3D PDM from segmented volumetric neuroradiological data sets},
  author={Fu, Yili and Gao, Wenpeng and Xiao, Yongfei and Liu, Jimin},
  journal={Computer methods and programs in biomedicine},
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  number={3},
  pages={199--210},
  year={2010},
  publisher={Elsevier}
}

@article{kim2016hindbrain,
  title={Hindbrain regional growth in preterm newborns and its impairment in relation to brain injury},
  author={Kim, Hosung and Gano, Dawn and Ho, Mai-Lan and Guo, Xiaoyue M and Unzueta, Alisa and Hess, Christopher and Ferriero, Donna M and Xu, Duan and Barkovich, A James},
  journal={Human brain mapping},
  volume={37},
  number={2},
  pages={678--688},
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  publisher={Wiley Online Library}
}

@article{shi2011two,
  title={Two-stage empirical likelihood for longitudinal neuroimaging data},
  author={Shi, Xiaoyan and Ibrahim, Joseph G and Lieberman, Jeffrey and Styner, Martin and Zhu, Hongtu},
  journal={The annals of applied statistics},
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  number={2B},
  pages={1132},
  year={2011},
  publisher={NIH Public Access}
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@article{shen2012fourier,
  title={Fourier methods for 3D surface modeling and analysis},
  author={Shen, Li and Kim, Sungeun and Wan, Jing and West, John D and Saykin, Andrew J},
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  volume={1},
  pages={175},
  year={2012},
  publisher={World Scientific}
}

@article{thompson2013hippocampal,
  title={Hippocampal shape variations at term equivalent age in very preterm infants compared with term controls: perinatal predictors and functional significance at age 7},
  author={Thompson, Deanne K and Adamson, Christopher and Roberts, Gehan and Faggian, Nathan and Wood, Stephen J and Warfield, Simon K and Doyle, Lex W and Anderson, Peter J and Egan, Gary F and Inder, Terrie E},
  journal={Neuroimage},
  volume={70},
  pages={278--287},
  year={2013},
  publisher={Elsevier}
}

@inproceedings{du2012local,
  title={Local Shape Representation in 3D: from Weighted Spherical Harmonics to Spherical Wavelet.},
  author={Du, Cheng-Jin and Ferguson, John G and Hawkins, Phillip T and Stephens, Len R and Bretschneider, Till},
  booktitle={BMVC},
  pages={1--12},
  year={2012}
}

@inproceedings{alhadidi2012use,
  title={The use of a custom made atlas as a template for corrective surgeries of asymmetric patients},
  author={AlHadidi, Abeer and Cevidanes, Lucia H and Cook, Richard and Festy, Frederic and Tyndall, Donald and Paniagua, Beatriz},
  booktitle={SPIE Medical Imaging},
  pages={83171Y--83171Y},
  year={2012},
  organization={International Society for Optics and Photonics}
}

@inproceedings{xu2011longitudinal,
  title={Longitudinal shape analysis of lateral ventricles during the first year of human life},
  author={Xu, S and Zhu, H and Styner, M and Gao, W and Jewells, V and Shen, D and Lin, W},
  booktitle={ISMRM},
  year={2011}
}

@article{porciuncula2014can,
  title={Can cone-beam computed tomography superimposition help orthodontists better understand relapse in surgical patients?},
  author={Porci{\'u}ncula, Guilherme Machado and Koerich, Leonardo and Eidson, Lindsey and Junior, Luiz Gonzaga Gandini and Gon{\c{c}}alves, Jo{\~a}o Roberto},
  journal={American Journal of Orthodontics and Dentofacial Orthopedics},
  volume={146},
  number={5},
  pages={641--654},
  year={2014},
  publisher={Elsevier}
}

@inproceedings{kirschner2011optimal,
  title={Optimal initialization for 3D correspondence optimization: an evaluation study},
  author={Kirschner, Matthias and Gollmer, Sebastian T and Wesarg, Stefan and Buzug, Thorsten M},
  booktitle={Biennial International Conference on Information Processing in Medical Imaging},
  pages={308--319},
  year={2011},
  organization={Springer}
}

@article{shakeri2016statistical,
  title={Statistical shape analysis of subcortical structures using spectral matching},
  author={Shakeri, Mahsa and Lombaert, Herve and Datta, Alexandre N and Oser, Nadine and L{\'e}tourneau-Guillon, Laurent and Lapointe, Laurence Vincent and Martin, Florence and Malfait, Domitille and Tucholka, Alan and Lipp{\'e}, Sarah and others},
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  pages={58--71},
  year={2016},
  publisher={Elsevier}
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@inproceedings{ciompi2015automatic,
  title={Automatic detection of spiculation of pulmonary nodules in computed tomography images},
  author={Ciompi, F and Jacobs, C and Scholten, ET and Van Riel, SJ and Wille, Mathilde Marie Winkler and Prokop, M and Van Ginneken, B},
  booktitle={SPIE Medical Imaging},
  pages={941409--941409},
  year={2015},
  organization={International Society for Optics and Photonics}
}

@article{manning2015differential,
  title={Differential hippocampal shapes in posterior cortical atrophy patients: A comparison with control and typical AD subjects},
  author={Manning, Emily N and Macdonald, Kate E and Leung, Kelvin K and Young, Jonathan and Pepple, Tracey and Lehmann, Manja and Zuluaga, Maria A and Cardoso, M Jorge and Schott, Jonathan M and Ourselin, Sebastien and others},
  journal={Human brain mapping},
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  pages={5123--5136},
  year={2015},
  publisher={Wiley Online Library}
}

@article{bernhardt2016subregional,
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  number={7},
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@article{tu2015skeletal,
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  year={2015}
}

@article{parnell2013magnetic,
  title={Magnetic resonance microscopy-based analyses of the neuroanatomical effects of gestational day 9 ethanol exposure in mice},
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@article{babapour2010novel,
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@article{liu2016gray,
  title={Gray matter structural compromise is equally distributed in left and right temporal lobe epilepsy},
  author={Liu, Min and Bernhardt, Boris C and Bernasconi, Andrea and Bernasconi, Neda},
  journal={Human brain mapping},
  volume={37},
  number={2},
  pages={515--524},
  year={2016},
  publisher={Wiley Online Library}
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@article{gomes2015diagnostic,
  title={Diagnostic index of three-dimensional osteoarthritic changes in temporomandibular joint condylar morphology},
  author={Gomes, Liliane R and Gomes, Marcelo and Jung, Bryan and Paniagua, Beatriz and Ruellas, Antonio C and Gon{\c{c}}alves, Jo{\~a}o Roberto and Styner, Martin A and Wolford, Larry and Cevidanes, Lucia},
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  number={3},
  pages={034501--034501},
  year={2015},
  publisher={International Society for Optics and Photonics}
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@book{alhadidi2010diagnosis,
  title={Diagnosis and quantitative assessment of mandibular asymmetry using CBCT image volumes},
  author={AlHadidi, Abeer},
  year={2010},
  publisher={The University of North Carolina at Chapel Hill}
}

@article{kim2015hippocampal,
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  author={Kim, Jaeil and Valdes-Hernandez, Maria del C and Royle, Natalie A and Park, Jinah},
  journal={IEEE transactions on medical imaging},
  volume={34},
  number={6},
  pages={1242--1261},
  year={2015},
  publisher={IEEE}
}

@article{looi2011morphometric,
  title={Morphometric analysis of subcortical structures in progressive supranuclear palsy: in vivo evidence of neostriatal and mesencephalic atrophy},
  author={Looi, Jeffrey CL and Macfarlane, Matthew D and Walterfang, Mark and Styner, Martin and Velakoulis, Dennis and L{\"a}tt, Jimmy and van Westen, Danielle and Nilsson, Christer},
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  number={2},
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  year={2011},
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}

@article{besson2014intra,
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  volume={102},
  pages={283--293},
  year={2014},
  publisher={Elsevier}
}

@article{kantarci2011antemortem,
  title={Antemortem hippocampal atrophy predicts presence of Alzheimer's disease pathology in pathologically proven lewy body disease},
  author={Kantarci, Kejal and Dickson, Dennis and Vemuri, Prashanthi and Ferman, Tanis and Boeve, Bradley and Smith, Glenn and Senjem, Mathew and Parisi, Joseph and Weigand, Stephen and Murray, Melissa and others},
  journal={Alzheimer's \& Dementia},
  volume={7},
  number={4},
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  year={2011},
  publisher={Elsevier}
}

@inproceedings{young2012classification,
  title={Classification of Alzheimer's disease patients with hippocampal shape, wrapper based feature selection and support vector machine},
  author={Young, Jonathan and Ridgway, Gerard and Leung, Kelvin and Ourselin, Sebastien},
  booktitle={SPIE Medical Imaging},
  pages={83140Q--83140Q},
  year={2012},
  organization={International Society for Optics and Photonics}
}

@inproceedings{chung2007encoding,
  title={Encoding neuroanatomical information using weighted spherical harmonic representation},
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  booktitle={Statistical Signal Processing, 2007. SSP'07. IEEE/SP 14th Workshop on},
  pages={146--150},
  year={2007},
  organization={IEEE}
}

@inproceedings{niethammer2007global,
  title={Global medical shape analysis using the Laplace-Beltrami spectrum},
  author={Niethammer, Marc and Reuter, Martin and Wolter, Franz-Erich and Bouix, Sylvain and Peinecke, Niklas and Koo, Min-Seong and Shenton, Martha E},
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  pages={850--857},
  year={2007},
  organization={Springer}
}

@article{nguyen2016use,
  title={The use of SPHARM-PDM and mean latitude axis to evaluate airway changes},
  author={Nguyen, Tung and Phillips, Ceib and Paniagua, Beatriz},
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  volume={86},
  number={6},
  pages={943--948},
  year={2016},
  publisher={Edward H. Angle Society of Orthodontists}
}

@inproceedings{paniagua2017diagnostic,
  title={Diagnostic Index: An open-source tool to classify TMJ OA condyles},
  author={Paniagua, Beatriz and Pascalb, Laura and Prietoc, Juan and Vimortb, Jean Baptiste and Gomesd, Liliane and Yatabee, Marilia and Ruellasf, Antonio Carlos and Budina, Francois and Pieperg, Steve and Stynerc, Martin and others},
  booktitle={SPIE Medical Imaging},
  pages={101372H--101372H},
  year={2017},
  organization={International Society for Optics and Photonics}
}

@article{tu2015fitting,
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  author={Tu, Liyun and Yang, Dan and Vicory, Jared and Zhang, Xiaohong and Pizer, Stephen M and Styner, Martin},
  journal={IEEE Signal Processing Letters},
  volume={22},
  number={12},
  pages={2269--2273},
  year={2015},
  publisher={IEEE}
}

@inproceedings{jakabek2016shape,
  title={SHAPE ANALYSIS USING SPHERICAL HARMONIC DESCRIPTION WITH POINT DISTRIBUTION MODELS (SPHARM-PDM): A POWERFUL TOOL FOR INVESTIGATING MORPHOLOGICAL BRAIN CHANGES},
  author={Jakabek, D and Macfarlane, MD and Santillo, AF and Owens-Walton, C and Power, BD and Hayhow, B and Walterfang, M and Georgiou-Karistianis, N and Vestberg, S and Velakoulis, D and others},
  booktitle={AUSTRALIAN AND NEW ZEALAND JOURNAL OF PSYCHIATRY},
  volume={50},
  pages={47--48},
  year={2016},
  organization={SAGE PUBLICATIONS LTD 1 OLIVERS YARD, 55 CITY ROAD, LONDON EC1Y 1SP, ENGLAND}
}

@article{bocchetta2015detailed,
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  author={Bocchetta, Martina and Gordon, Elizabeth and Manning, Emily and Cash, David M and Espak, Miklos and Modat, Marc and Ourselin, Sebastien and Rossor, Martin N and Frisoni, Giovanni Battista and Rohrer, Jonathan D},
  journal={Alzheimer's \& Dementia: The Journal of the Alzheimer's Association},
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  number={7},
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  year={2015},
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@inproceedings{styner2007progress,
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  booktitle={Medical Imaging 2007: Image Processing},
  year={2007}
}

@phdthesis{alhadidi2014use,
  title={The use of 3D image analysis in the diagnosis and treatment planning of corrective surgery for mandibular asymmetry patients},
  author={Alhadidi, Abeer},
  year={2014},
  school={King's College London}
}

@inproceedings{shishegar2014method,
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  author={Shishegar, Rosita and Britto, Joanne M and Johnston, Leigh A},
  booktitle={Engineering in Medicine and Biology Society (EMBC), 2014 36th Annual International Conference of the IEEE},
  pages={1525--1528},
  year={2014},
  organization={IEEE}
}

@book{kim2012advanced,
  title={Advanced morphometry of mesiotemporal structures in temporal lobe epilepsy},
  author={Kim, Hosung},
  year={2012},
  publisher={McGill University (Canada)}
}


@inproceedings{paniagua2017brain,
  title={Brain structure in sagittal craniosynostosis.},
  author={Paniagua, Beatriz and Kim, Sunghyung and Moustapha, Mahmoud and Styner, Martin and Cody-Hazlett, Heather and Gimple-Smith, Rachel and Rumple, Ashley and Piven, Joseph and Gilmore, John and Skolnick, Gary and others},
  booktitle={SPIE Medical Imaging},
  pages={101370O--101370O},
  year={2017},
  organization={International Society for Optics and Photonics}
}

@inproceedings{prieto2017federating,
  title={Federating Heterogeneous Datasets to Enhance Data Sharing and Experiment Reproducibility},
  author={Prieto, Juan C and Paniagua, Beatriz and Yatabe, Marilia S and Ruellas, Antonio CO and Fattori, Liana and Muniz, Luciana and Styner, Martin and Cevidanes, Lucia},
  booktitle={SPIE Medical Imaging},
  pages={101372J--101372J},
  year={2017},
  organization={International Society for Optics and Photonics}
}

@inproceedings{kashyap2016statistical,
  title={Statistical shape analysis of automatically segmented femur bones: Data from the osteoarthritis initiative},
  author={Kashyap, Satyananda and Oguz, Ipek and Sonka, Milan},
  booktitle={Biomedical Imaging (ISBI), 2016 IEEE 13th International Symposium on},
  pages={651--655},
  year={2016},
  organization={IEEE}
}

@article{gao20163d,
  title={3D shape comparison of cardiac geometries using a Laplace spectral-shape-matching approach},
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  volume={4},
  number={2},
  pages={86--97},
  year={2016},
  publisher={Taylor \& Francis}
}

@inproceedings{caldairou2016surface,
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  pages={379--387},
  year={2016},
  organization={Springer}
}

@article{lindberg2012shape,
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  author={Lindberg, Olof and Walterfang, Mark and Looi, Jeffrey CL and Malykhin, Nikolai and {\"O}stberg, Per and Zandbelt, Bram and Styner, Martin and Velakoulis, Dennis and {\"O}rndahl, Eva and Cavallin, Lena and others},
  journal={Journal of Alzheimer's disease: JAD},
  volume={30},
  number={2},
  pages={355},
  year={2012},
  publisher={NIH Public Access}
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@phdthesis{sterling2013morphologic,
  title={Morphologic Analysis of the Striatum in Parkinson's Disease},
  author={Sterling, Nicholas William},
  year={2013},
  school={The Pennsylvania State University}
}

@inproceedings{lee2016enhanced,
  title={Enhanced cortical thickness measurements for rodent brains via Lagrangian-based RK4 streamline computation},
  author={Lee, Joohwi and Kim, Sun Hyung and Oguz, Ipek and Styner, Martin},
  booktitle={SPIE Medical Imaging},
  pages={97840B--97840B},
  year={2016},
  organization={International Society for Optics and Photonics}
}

@article{kim2016surface,
  title={Surface-based morphometry reveals caudate subnuclear structural damage in patients with premotor Huntington disease},
  author={Kim, Hosung and Kim, Ji-hoon and Possin, Katherine L and Winer, Joseph and Geschwind, Michael D and Xu, Duan and Hess, Christopher P},
  journal={Brain Imaging and Behavior},
  pages={1--8},
  year={2016},
  publisher={Springer}
}

@article{sterling2013striatal,
  title={Striatal Atrophy and Shape Changes in Parkinson's Disease (S33. 004)},
  author={Sterling, Nicholas and Du, Guangwei and Lewis, Mechelle and Kong, Lan and Styner, Martin and Huang, Xuemei},
  journal={Neurology},
  volume={80},
  number={7 Supplement},
  pages={S33--004},
  year={2013},
  publisher={AAN Enterprises}
}

@article{dawe2011changes,
  title={Changes in hippocampal volume and shape are associated with Alzheimer's disease and other neuropathologies common in the elderly},
  author={Dawe, Robert and Schneider, Julie and Bennett, David and Arfanakis, Konstantinos},
  journal={Alzheimer's \& Dementia},
  volume={7},
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  year={2011},
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@inproceedings{hernandez2014automatic,
  title={Automatic Hippocampal Multimodal Assessment for Studies of Stroke and Small Vessel Disease.},
  author={Hern{\'a}ndez, Maria del C Vald{\'e}s and Kim, Jae-il and Whiteford, Ian and Qiu, Xinyi and Wardlaw, Joanna M and Park, Jinah},
  booktitle={MIUA},
  pages={33--38},
  year={2014}
}

@article{thompsonlongitudinal,
  title={Longitudinal hippocampal shape changes between term-equivalent and 7 years in very preterm and full-term children},
  author={Thompson, Deanne K and Adamson, Christopher and Omizzolo, Cristina G and Doyle, Lex W and Egan, Gary F and Inder, Terrie E and Anderson, Peter J}
}

@inproceedings{zhou2008efficient,
  title={An Efficient Permutation Approach for Classical and Bioequivalence Hypothesis Testing of Biomedical Shape Study},
  author={Zhou, Chunxiao and Wang, Yongmei Michelle},
  booktitle={BioMedical Engineering and Informatics, 2008. BMEI 2008. International Conference on},
  volume={2},
  pages={737--741},
  year={2008},
  organization={IEEE}
}

@article{goradia2016distinct,
  title={Distinct differences in striatal dysmorphology between attention deficit hyperactivity disorder boys with and without a comorbid reading disability},
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@inproceedings{cates2007shape,
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@inproceedings{he2010shape,
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  booktitle={SPIE Medical Imaging},
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  year={2010},
  organization={International Society for Optics and Photonics}
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@inproceedings{he2008abnormalities,
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}

@inproceedings{gao2014framework,
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  year={2014},
  organization={International Society for Optics and Photonics}
}

@article{koerich2015three,
  title={Three-dimensional regional displacement after surgical--orthodontic correction of Class III malocclusion},
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  journal={Orthodontics \& craniofacial research},
  year={2015},
  publisher={Wiley Online Library}
}

@article{clogenson2015statistical,
  title={A statistical shape model of the human second cervical vertebra},
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  number={7},
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  year={2015},
  publisher={Springer}
}

@article{chung2007weighted,
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@article{ciompi2015bag,
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  year={2015},
  publisher={IEEE}
}

@article{morey2009comparison,
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  author={Morey, Rajendra A and Petty, Christopher M and Xu, Yuan and Hayes, Jasmeet Pannu and Wagner, H Ryan and Lewis, Darrell V and LaBar, Kevin S and Styner, Martin and McCarthy, Gregory},
  journal={Neuroimage},
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@article{isikli2013altered,
  title={Altered hippocampal formation shape in first-episode depressed patients at 5-year follow-up},
  author={Is{\i}kl{\i}, Serhan and Ugurlu, Onur and Durmusoglu, Ece and Kizilates, Gozde and Kitis, Omer and Ozan, Erol and Eker, Cagdas and Coburn, Kerry and Gonul, Ali Saffet},
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  year={2013},
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@article{chupin2011segmentation,
  title={Segmentation cibl{\'e}e d’images IRM et maladie d’Alzheimer},
  author={Chupin, Marie and G{\'e}rardin, Emilie and Cuingnet, R{\'e}mi and Bardinet, Eric and Dormont, Didier and Colliot, Olivier and Garnero, Line},
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@article{edelmann2014diffusion,
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  publisher={Oxford Univ Press}
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@article{melinska2015statistical,
  title={Statistical, Morphometric, Anatomical Shape Model (Atlas) of Calcaneus},
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@inproceedings{lyu2013cortical,
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  booktitle={SPIE Medical Imaging},
  pages={86692X--86692X},
  year={2013},
  organization={International Society for Optics and Photonics}
}

@article{macfarlane2015shape,
  title={Shape abnormalities of the caudate nucleus correlate with poorer gait and balance: results from a subset of the LADIS study},
  author={Macfarlane, Matthew D and Looi, Jeffrey CL and Walterfang, Mark and Spulber, Gabriela and Velakoulis, Dennis and Styner, Martin and Crisby, Milita and {\"O}rndahl, Eva and Erkinjuntti, Timo and Waldemar, Gunhild and others},
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  year={2015},
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@article{haubold2012annual,
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  author={Haubold, Alexander and Peterson, Bradley S and Bansal, Ravi},
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  number={5},
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  year={2012},
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@article{cardoso2014apatia,
  title={A Apatia na Doen{\c{c}}a de Parkinson est{\'a} Associada {\`a} Atrofia do N{\'u}cleo Accumbens: Uma An{\'a}lise Morfol{\'o}gica por Resson{\^a}ncia Magn{\'e}tica},
  author={Cardoso, Francisco},
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  volume={6},
  number={3},
  year={2014}
}

@article{dujardin2014apathy,
  title={“Apathy in Parkinson's disease is associated with nucleus accumbens atrophy: A magnetic resonance imaging shape analysis” Nicolas Carriere, Pierre Besson, Kathy},
  author={Dujardin, Alain Duhamel and Defebvre, Luc and Delmaire, Christine and Devos, David},
  journal={Mov Disord},
  volume={29},
  pages={897--903},
  year={2014}
}

@article{kim2009interactive,
  title={Interactive Shape Analysis of the Hippocampus in a Virtual Environment},
  author={Kim, Jeong-Sik and Choi, Soo-Mi},
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  volume={10},
  number={5},
  pages={165--181},
  year={2009},
  publisher={Korean Society for Internet Information}
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@article{dawe2011neuropathologic,
  title={Neuropathologic correlates of hippocampal atrophy in the elderly: a clinical, pathologic, postmortem MRI study},
  author={Dawe, Robert J and Bennett, David A and Schneider, Julie A and Arfanakis, Konstantinos},
  journal={PloS one},
  volume={6},
  number={10},
  pages={e26286},
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}

@article{joshisurface,
  title={Surface Shape Matching and Analysis using Intrinsic Coordinate Parameterizations},
  author={Joshi, Shantanu H and Shi, Jie and Wang, Yalin and Narr, Katherine L and Toga, Arthur W and Woods, Roger P},
  journal={Mathematical Foundations of Computational Anatomy},
  pages={59}
}

@inproceedings{cates2008particle,
  title={Particle-based shape analysis of multi-object complexes},
  author={Cates, Joshua and Fletcher, P Thomas and Styner, Martin and Hazlett, Heather Cody and Whitaker, Ross},
  booktitle={International Conference on Medical Image Computing and Computer-Assisted Intervention},
  pages={477--485},
  year={2008},
  organization={Springer}
}

@article{wolford2015condylar,
  title={Condylar resorption of the temporomandibular joint: how do we treat it?},
  author={Wolford, Larry M and Gon{\c{c}}alves, Jo{\~a}o Roberto},
  journal={Oral and maxillofacial surgery clinics of North America},
  volume={27},
  number={1},
  pages={47--67},
  year={2015},
  publisher={Elsevier}
}

@inproceedings{boucharin2011efficient,
  title={Efficient, graph-based white matter connectivity from orientation distribution functions via multi-directional graph propagation},
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  booktitle={SPIE Medical Imaging},
  pages={79620S--79620S},
  year={2011},
  organization={International Society for Optics and Photonics}
}

@article{kronman2012anatomical,
  title={Anatomical structures segmentation by spherical 3D ray casting and gradient domain editing},
  author={Kronman, Achia and Joskowicz, Leo and Sosna, Jacob},
  journal={Medical Image Computing and Computer-Assisted Intervention--MICCAI 2012},
  pages={363--370},
  year={2012},
  publisher={Springer}
}

@article{kurtek2012elastic,
  title={Elastic geodesic paths in shape space of parameterized surfaces},
  author={Kurtek, Sebastian and Klassen, Eric and Gore, John C and Ding, Zhaohua and Srivastava, Anuj},
  journal={IEEE transactions on pattern analysis and machine intelligence},
  volume={34},
  number={9},
  pages={1717--1730},
  year={2012},
  publisher={IEEE}
}

@article{shi2010robust,
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  author={Shi, Yonggang and Lai, Rongjie and Morra, Jonathan H and Dinov, Ivo and Thompson, Paul M and Toga, Arthur W},
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  number={12},
  pages={2009--2022},
  year={2010},
  publisher={IEEE}
}

@article{chunga2009multivariate,
  title={Multivariate Shape Modeling and Its Application to Characterizing Abnormal Amygdala Shape in Autism},
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  year={2009}
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@inproceedings{raviv2012statistical,
  title={Statistical shape analysis for population studies via level-set based shape morphing},
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  booktitle={European Conference on Computer Vision},
  pages={42--51},
  year={2012},
  organization={Springer}
}

@article{khairy2015continuum,
  title={Continuum mechanics modeling of Drosophila mesoderm invagination based on spherical harmonics accounts for long-range tissue remodeling},
  author={Khairy, Khaled and Lemon, William and Amat, Fernando and Keller, Philipp},
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  year={2015},
  publisher={Cold Spring Harbor Labs Journals}
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@phdthesis{kashyap2016quantitative,
  title={Quantitative analysis and segmentation of knee MRI using layered optimal graph segmentation of multiple objects and surfaces},
  author={Kashyap, Satyananda},
  year={2016},
  school={The University of Iowa}
}

@inproceedings{shi2015abnormal,
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  author={Shi, Jie and Wang, Yalin and Lao, Yi and Ceschin, Rafael and Mi, Liang and Nelson, Marvin D and Panigrahy, Ashok and Lepor{\'e}, Natasha},
  booktitle={11th International Symposium on Medical Information Processing and Analysis (SIPAIM 2015)},
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  year={2015},
  organization={International Society for Optics and Photonics}
}

@incollection{kim2011soft,
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  year={2011},
  publisher={Springer}
}

@article{turner2016striatal,
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@article{he2008abnormalities,
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}

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}

@article{bianchi2016validação,
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  year={2016},
  publisher={Universidade Estadual Paulista (UNESP)}
}

@article{casals2010implementacion,
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  year={2010}
}

@article{sung2006customized,
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@article{oguz2016entropy,
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}

@inproceedings{he2008detecting,
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  booktitle={International Symposium on Visual Computing},
  pages={743--751},
  year={2008},
  organization={Springer}
}

@inproceedings{paniagua2015validation,
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  booktitle={SPIE Medical Imaging},
  pages={94171B--94171B},
  year={2015},
  organization={International Society for Optics and Photonics}
}

@inproceedings{cates2008shape,
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  booktitle={Biomedical Imaging: From Nano to Macro, 2008. ISBI 2008. 5th IEEE International Symposium on},
  pages={512--515},
  year={2008},
  organization={IEEE}
}

@inproceedings{he2010statistical,
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  author={He, Qing and Karpman, Dmitriy and Duan, Ye},
  booktitle={SPIE Medical Imaging},
  pages={762609--762609},
  year={2010},
  organization={International Society for Optics and Photonics}
}

@phdthesis{vicory2016shape,
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  author={Vicory, Jared},
  year={2016},
  school={University of North Carolina at Chapel Hill}
}

@article{benitez2013sexual,
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  year={2013}
}

@article{kim2016geodesic,
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  pages={63},
  year={2016},
  publisher={The University of Utah}
}

@article{fish2016acute,
  title={Acute alcohol exposure during neurulation: Behavioral and brain structural consequences in adolescent C57BL/6J mice},
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@inproceedings{cates2008hypothesis,
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  year={2008}
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@article{porciuncula2014avancco,
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  year={2014},
  publisher={Universidade Estadual Paulista (UNESP)}
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@inproceedings{he2009shape,
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  author={He, Qing and Duan, Ye and Yin, Xiaotian and Gu, Xianfeng and Karsch, Kevin and Miles, Judith},
  booktitle={SPIE Medical Imaging},
  pages={726217--726217},
  year={2009},
  organization={International Society for Optics and Photonics}
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@article{junqueira2015comparison,
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@article{he2008abnormalities,
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@article{he2009detecting,
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@phdthesis{datar2016statistical,
  title={Statistical analysis of ensembles of nonregular shapes},
  author={Datar, Manasi Prakash},
  year={2016},
  school={The University of Utah}
}

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  number={1-2},
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  year={2014},
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@article{granell2014correlacion,
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  author={Granell Moreno, Esther and G{\'o}mez Ans{\'o}n, Beatriz and Mart{\'\i}nez Noguera, Antonio},
  year={2014},
  publisher={Universitat Aut{\`o}noma de Barcelona,}
}

@book{lindberg2012aging,
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  author={Lindberg, Olof},
  year={2012},
  publisher={Inst f{\"o}r neurobiologi, v{\aa}rdvetenskap och samh{\"a}lle/Dept of Neurobiology, Care Sciences and Society}
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@inproceedings{lombaert2015brain,
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@article{cates2014computational,
  title={Computational shape models characterize shape change of the left atrium in atrial fibrillation},
  author={Cates, Joshua and Bieging, Erik and Morris, Alan and Gardner, Gregory and Akoum, Nazem and Kholmovski, Eugene and Marrouche, Nassir and McGann, Christopher and MacLeod, Rob S},
  journal={Clinical Medicine Insights. Cardiology},
  volume={8},
  number={Suppl 1},
  pages={99},
  year={2014},
  publisher={Libertas Academica}
}