CustomSegmenterDemo.java

/*-
 * #%L
 * The Labkit image segmentation tool for Fiji.
 * %%
 * Copyright (C) 2017 - 2024 Matthias Arzt
 * %%
 * Redistribution and use in source and binary forms, with or without
 * modification, are permitted provided that the following conditions are met:
 * 
 * 1. Redistributions of source code must retain the above copyright notice,
 *    this list of conditions and the following disclaimer.
 * 2. Redistributions in binary form must reproduce the above copyright notice,
 *    this list of conditions and the following disclaimer in the documentation
 *    and/or other materials provided with the distribution.
 * 
 * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
 * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
 * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
 * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE
 * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
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 * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
 * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
 * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
 * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
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 * #L%
 */

package demo.custom_segmenter;

import ij.ImagePlus;
import net.imagej.patcher.LegacyInjector;
import net.imglib2.img.Img;
import net.imglib2.img.display.imagej.ImageJFunctions;
import sc.fiji.labkit.ui.LabkitFrame;
import sc.fiji.labkit.ui.inputimage.DatasetInputImage;
import sc.fiji.labkit.ui.segmentation.SegmentationPlugin;
import sc.fiji.labkit.ui.segmentation.Segmenter;
import net.imglib2.type.numeric.NumericType;
import org.scijava.plugin.Plugin;

/**
 * This class just starts Labkit. Have a look into the {@link CustomSegmenter}
 * and {@link CustomSegmenterPlugin} to learn how to integrate a custom
 * segmentation algorithm into Labkit.
 */
public class CustomSegmenterDemo {

	public static void main(String... args) {
		LegacyInjector.preinit();
		Img<? extends NumericType<?>> image = ImageJFunctions.wrap(new ImagePlus(
			"https://imagej.nih.gov/ij/images/AuPbSn40-2.jpg"));
		LabkitFrame.showForImage(null, new DatasetInputImage(image));
	}

}