install-list.sh

# spack install blat@35
# spack install htslib@1.9
# spack install htslib@1.13
# spack install bowtie2@2.4.1
# spack install bowtie2@2.4.2
# spack install gatk@4.2.2.0
# spack install minimap2@2.14
# spack install blast-plus@2.12.0
# spack install samtools@1.13
# spack install samtools@1.9
# spack install sratoolkit@2.9.6
# spack install sratoolkit@2.10.9
# spack install star@2.7.6a
# spack install bamtools@2.5.1
# spack install bamtools@2.5.2
# spack install angsd@0.935
# spack install itk@5.2.1 ^fftw -mpi
# spack install beast1@1.10.4
# spack install cufflinks@2.2.1
# spack install fastqc@0.11.5
# spack install fastqc@0.11.9
# spack install bedtools2@2.25.0
# spack install bedtools2@2.30.0
# spack install bwa@0.7.15
# spack install bwa@0.7.17
# spack install mothur@1.46.1
# spack install raxml@8.2.11 +pthreads
# spack install raxml@8.2.12 +pthreads
# spack install stringtie@2.1.7
# spack install stringtie@2.2.1
# spack install canu@2.2
# spack install imagemagick@7.1.0-33
# spack install homer@4.11.1 ^r@4.1.1 # built with r@4.1.1 the 1st time, before decided to match to stick built R version
                                      # forgot to specify r@4.1.1 initially, and it errored when trying to use r@4.2.0
# spack install bcl2fastq2@2.20.0.422
# spack install clustal-omega@1.2.4
# spack install py-macs2 ^python@3.8.12
# spack install figtree@1.4.4
# spack install hisat2@2.2.0
# spack install r-seurat@4.1.1 ^r@4.1.1 +X
# spack install ncftp@3.2.6
# spack install openslide@3.4.1
# spack install impute2@2.3.2
# spack install salmon@1.9.0
# spack install trimgalore@0.6.7
# spack install spades@3.15.5
# spack install igv@2.8.9
# spack install py-weblogo@3.7.12
# spack install cap3@2015-02-11
# spack install rmats@4.0.2
# spack install seqkit@2.3.0
# spack install delly2@0.9.1
# spack install bcftools@1.12
# spack install r-seurat@4.1.1 ^r@4.2.0 +X
# spack install valgrind@3.20.0