Welcome to the MINI2P_toolbox documentation!
Please find some helpful user tips and additional information in the following pages:
- Requirements: Non-optical requirements for the mini2p system, both hardware and software
- Software/AnimalTracker.vi: How-to for the AnimalTracker LabView application
- DeepLabCut Models: Details about the trained DLC models
- Analysis/DistortionCleaner: an application to elimiate the scanning distortion of MINI2P imaging, callibrate FOV and pixel size, and generate transform matrix.
- Analysis/NATEX: Neuronal Activity Tracking Explorer, an application to load, process and preview the neuronal activity data (from the Suite2P output) and the tracking data (from the DLC output)
- Analysis/StitchingChecker: : an application to stitch multiple FOV recorded from different positions of the cortex.