config.yaml

# genome features index name
genome_features_current_index_name: genome_features

# Mapping of KBase type names to index names
ws_type_to_indexes:
  KBaseNarrative.Narrative: narrative
  KBaseFile.PairedEndLibrary: reads
  KBaseFile.SingleEndLibrary: reads
  KBaseGenomesAnnotations.Assembly: assembly
  KBaseGenomes.Genome: genome
  KbaseGenomes.Pangenome: pangenome
  KBaseGenomeAnnotations.Taxon: taxon
  KBaseTrees.Tree: tree
  KBaseMatrices.AttributeMapping: attribute_mapping
  KBaseMatrices.MetaboliteMatrix: matrix
  KBaseMatrices.DifferentialExpressionMatrix: matrix
  KBaseMatrices.ExpressionMatrix: matrix
  KBaseMatrices.FitnessMatrix: matrix
  KBaseMatrices.TraitMatrix: matrix
  KBaseSets.GenomeSet: genomeset
  KBaseMetagenomes.AnnotatedMetagenomeAssembly: annotated_metagenome_assembly
  KBaseSets.SampleSet: sample_set

es_type_global_name: data

# SDK apps used for indexing, map from type_module.type_name -> {'sdk_func': _, 'sdk_app': _, 'sdk_version': _}
sdk_indexer_apps:
  KBaseMatrices.MetaboliteMatrix:
    sdk_app: kbasematrices_indexer
    sdk_func: run_kbasematrices_indexer
    sub_obj_index: attribute_mapping
  KBaseMatrices.DifferentialExpressionMatrix:
    sdk_app: kbasematrices_indexer
    sdk_func: run_kbasematrices_indexer
    sub_obj_index: attribute_mapping
  KBaseMatrices.ExpressionMatrix:
    sdk_app: kbasematrices_indexer
    sdk_func: run_kbasematrices_indexer
    sub_obj_index: attribute_mapping
  KBaseMatrices.FitnessMatrix:
    sdk_app: kbasematrices_indexer
    sdk_func: run_kbasematrices_indexer
    sub_obj_index: attribute_mapping
  KBaseMatrices.TraitMatrix:
    sdk_app: kbasematrices_indexer
    sdk_func: run_kbasematrices_indexer
    sub_obj_index: attribute_mapping
  KBaseSets.GenomeSet:
    sdk_app: genomeset_indexer
    sdk_func: run_genomeset_indexer

# Which indexes are considered "subobjects" (nested under workspace objects, such as genome features)
ws_subobjects:
  - "genome_features_2"
  - "pangenome_orthologfamily_1"
  - "attribute_mapping_1"
  - "annotated_metagenome_assembly_features_2"
  - "annotated_metagenome_assembly_features_version_2"

# Generic, global type mappings. These can be reused in any index mappings below.
global_mappings:
  ws_auth:
    access_group: {type: integer}
    is_public: {type: boolean}
  ws_object:
    agg_fields: {type: text} # Uses the copy_to property for a combined text search
    timestamp: {type: date}
    obj_name: {type: keyword, copy_to: agg_fields}
    creation_date: {type: date}
    shared_users: {type: keyword}
    creator: {type: keyword, copy_to: agg_fields}
    version: {type: integer}
    obj_id: {type: integer}
    copied: {type: keyword}
    tags: {type: keyword, copy_to: agg_fields}
    obj_type_version: {type: keyword}
    obj_type_module: {type: keyword, copy_to: agg_fields}
    obj_type_name: {type: keyword, copy_to: agg_fields}
  ws_subobject:
    parent_id: {type: keyword}

# For each index alias, what are the versioned index names for the latest versions of each?
latest_versions:
  narrative: "narrative_1"
  reads: "reads_1"
  assembly: "assembly_1"
  genome: "genome_1"
  genome_features: "genome_features_2"
  pangenome: "pangenome_1"
  pangenome_orthologfamily: "pangenome_orthologfamily_1"
  taxon: "taxon_1"
  tree: "tree_1"
  matrix: "matrix_1"
  attribute_mapping: "attribute_ma pping_1"
  genomeset: "genomeset_1"
  indexing_errors: "indexing_errors_1"
  indexer_messages: "indexer_messages_1"
  annotated_metagenome_assembly: "annotated_metagenome_assembly_2"
  annotated_metagenome_assembly_features: "annotated_metagenome_assembly_features_2"
  annotated_metagenome_assembly_version: "annotated_metagenome_assembly_version_2"
  annotated_metagenome_assembly_features_version: "annotated_metagenome_assembly_features_version_2"
  sample_set: "sample_set_1"
  sample_set_version: "sample_set_version_1"
  sample: "sample_1"

# Map from unversioned alias to versioned indexes
aliases:
  default_search:
    - "narrative_1"
    - "reads_1"
    - "assembly_1"
    - "genome_1"
    - "pangenome_1"
    - "pangenome_orthologfamily_1"
    - "taxon_1"
    - "tree_1"
    - "matrix_1"
    - "attribute_mapping_1"
    - "genomeset_1"
    - "indexing_errors_1"
    - "indexer_messages_1"
    - "annotated_metagenome_assembly_2"
    - "annotated_metagenome_assembly_features_2"
  narrative:
    - "narrative_1"
  reads:
    - "reads_1"
  assembly:
    - "assembly_1"
  genome:
    - "genome_1"
  genome_features:
    - "genome_features_2"
  pangenome:
    - "pangenome_1"
  pangenome_orthologfamily:
    - "pangenome_orthologfamily_1"
  taxon:
    - "taxon_1"
  tree:
    - "tree_1"
  matrix:
    - "matrix_1"
  attribute_mapping:
    - "attribute_mapping_1"
  genomeset:
    - "genomeset_1"
  indexing_errors:
    - "indexing_errors_1"
  indexer_messages:
    - "indexer_messages_1"
  annotated_metagenome_assembly:
    - "annotated_metagenome_assembly_2"
  annotated_metagenome_assembly_features:
    - "annotated_metagenome_assembly_features_2"
  annotated_metagenome_assembly_version:
    - "annotated_metagenome_assembly_version_2"
  annotated_metagenome_assembly_features_version:
    - "annotated_metagenome_assembly_features_version_2"
  sample_set:
    - "sample_set_1"
  sample_set_version:
    - "sample_set_version_1"
  sample:
    - "sample_1"

# All ES type mappings
mappings:

  "narrative_1":
    global_mappings: [ws_auth, ws_object]
    properties:
      narrative_title: {type: text, copy_to: agg_fields}
      data_objects:
        type: nested
        properties:
          name: {type: keyword, copy_to: agg_fields}
          obj_type: {type: keyword, copy_to: agg_fields}
      cells:
        type: object
        properties:
          desc: {type: text, copy_to: agg_fields}
          cell_type: {type: keyword}
      total_cells: {type: short}

  "narrative_2":
    global_mappings: [ws_auth, ws_object]
    properties:
      narrative_title:
        type: text
        copy_to: agg_fields
        fields:
          raw:
            type: keyword
      owner: {type: keyword, copy_to: agg_fields}
      is_temporary: {type: boolean}
      is_narratorial: {type: boolean}
      modified_at: {type: date}
      data_objects:
        type: nested
        properties:
          name: {type: keyword, copy_to: agg_fields}
          obj_type: {type: keyword, copy_to: agg_fields}
      cells:
        type: object
        properties:
          desc: {type: text, copy_to: agg_fields}
          cell_type: {type: keyword}
      total_cells: {type: short}

  "reads_1":
    global_mappings: [ws_auth, ws_object]
    properties:
      sequencing_tech: {type: keyword, copy_to: agg_fields}
      size: {type: integer}
      interleaved: {type: boolean}
      single_genome: {type: boolean}
      provenance_services: {type: keyword}
      phred_type: {type: text}
      gc_content: {type: float}
      mean_quality_score: {type: float}
      mean_read_length: {type: float}

  "reads_2":
    global_mappings: [ws_auth, ws_object]
    properties:
      sequencing_tech: {type: keyword, copy_to: agg_fields}
      size: {type: long}
      interleaved: {type: boolean}
      single_genome: {type: boolean}
      provenance_services: {type: keyword}
      phred_type: {type: text}
      gc_content: {type: float}
      mean_quality_score: {type: float}
      mean_read_length: {type: float}

  "assembly_1":
    global_mappings: [ws_auth, ws_object]
    properties:
      assembly_name: {type: keyword, copy_to: agg_fields}
      mean_contig_length: {type: float}
      percent_complete_contigs: {type: float}
      percent_circle_contigs: {type: float}
      assembly_id: {type: keyword}
      gc_content: {type: float}
      size: {type: integer}
      num_contigs: {type: integer}
      taxon_ref: {type: keyword}
      external_origination_date: {type: keyword}  # should maybe be of type date?
      external_source_id: {type: keyword}
      external_source: {type: keyword}

  "assembly_2":
    global_mappings: [ws_auth, ws_object]
    properties:
      assembly_name: {type: keyword, copy_to: agg_fields}
      mean_contig_length: {type: float}
      percent_complete_contigs: {type: float}
      percent_circle_contigs: {type: float}
      assembly_id: {type: keyword}
      gc_content: {type: float}
      size: {type: long}
      num_contigs: {type: integer}
      taxon_ref: {type: keyword}
      external_origination_date: {type: keyword} # should maybe be of type date?
      external_source_id: {type: keyword}
      external_source: {type: keyword}

  "genome_1":
    global_mappings: [ws_auth, ws_object]
    properties:
      genome_id: {type: keyword}
      scientific_name: {type: keyword, copy_to: agg_fields}
      size: {type: integer}
      num_contigs: {type: integer}
      genome_type: {type: keyword, copy_to: agg_fields}
      gc_content: {type: float}
      taxonomy: {type: keyword, copy_to: agg_fields}
      mean_contig_length: {type: float}
      external_origination_date: {type: keyword}  # should maybe be of type date?
      original_source_file_name: {type: keyword}
      # new fields to include:
      cds_count: {type: integer}
      feature_count: {type: integer}
      mrna_count: {type: integer}
      non_coding_feature_count: {type: integer}
      assembly_ref: {type: keyword, copy_to: agg_fields}
      source_id: {type: keyword}
      feature_counts: {type: object}
      source: {type: keyword, copy_to: agg_fields}
      warnings: {type: text}

  "genome_2":
    global_mappings: [ws_auth, ws_object]
    properties:
      genome_id: {type: keyword}
      scientific_name:
        type: text
        copy_to: agg_fields
        fields:
          raw:
            type: keyword
      size: {type: long}
      num_contigs: {type: integer}
      genome_type: {type: keyword, copy_to: agg_fields}
      gc_content: {type: float}
      taxonomy:
        type: text
        copy_to: agg_fields
      mean_contig_length: {type: float}
      external_origination_date: {type: keyword} # should maybe be of type date?
      original_source_file_name: {type: keyword}
      # new fields to include:
      cds_count: {type: integer}
      feature_count: {type: integer}
      mrna_count: {type: integer}
      non_coding_feature_count: {type: integer}
      assembly_ref: {type: keyword, copy_to: agg_fields}
      source_id: {type: keyword}
      feature_counts:
        type: nested
        dynamic: true
      source: {type: keyword, copy_to: agg_fields}
      warnings: {type: text}
      publication_titles: {type: text, copy_to: agg_fields}
      publication_authors: {type: text, copy_to: agg_fields}

  "genome_features_2":
    global_mappings: [ws_subobject, ws_auth, ws_object]
    properties:
      id: {type: keyword}
      genome_scientific_name: {type: keyword, copy_to: agg_fields}
      feature_type: {type: keyword, copy_to: agg_fields}
      functions: {type: keyword, copy_to: agg_fields}
      contig_ids: {type: keyword, copy_to: agg_fields}
      sequence_length: {type: integer}
      genome_version: {type: integer}
      assembly_ref: {type: keyword, copy_to: agg_fields}
      genome_feature_type: {type: keyword}
      starts: {type: integer}
      strands: {type: keyword}
      stops: {type: integer}
      aliases: {type: keyword, copy_to: agg_fields}

  "genome_features_3":
    global_mappings: [ws_subobject, ws_auth, ws_object]
    properties:
      id: {type: keyword}
      genome_scientific_name:
        type: text
        copy_to: agg_fields
        fields:
          raw:
            type: keyword
      feature_type: {type: keyword, copy_to: agg_fields}
      functions: {type: keyword, copy_to: agg_fields}
      contig_ids: {type: keyword, copy_to: agg_fields}
      sequence_length: {type: integer}
      genome_version: {type: integer}
      assembly_ref: {type: keyword, copy_to: agg_fields}
      genome_feature_type: {type: keyword}
      starts: {type: integer}
      strands: {type: keyword}
      stops: {type: integer}
      aliases: {type: keyword, copy_to: agg_fields}

  "pangenome_1":
    global_mappings: [ws_auth, ws_object]
    properties:
      pangenome_id: {type: keyword}
      pangenome_name: {type: keyword, copy_to: agg_fields}
      pangenome_type: {type: keyword, copy_to: agg_fields}
      genome_upas: {type: keyword, copy_to: agg_fields}

  "pangenome_orthologfamily_1":
    global_mappings: [ws_subobject, ws_auth, ws_object]
    properties:
      ortholog_id: {type: keyword}
      ortholog_type: {type: keyword}
      function: {type: keyword, copy_to: agg_fields}
      gene_ids: {type: keyword}

  "taxon_1":
    global_mappings: [ws_auth, ws_object]
    properties:
      scientific_name: {type: keyword, copy_to: agg_fields}
      scientific_lineage: {type: keyword, copy_to: agg_fields}
      domain: {type: keyword, copy_to: agg_fields}
      kingdom: {type: keyword, copy_to: agg_fields}
      parent_taxon_ref: {type: keyword}
      genetic_code: {type: integer}
      aliases: {type: keyword, copy_to: agg_fields}

  "taxon_2":
    global_mappings: [ws_auth, ws_object]
    properties:
      scientific_name:
        type: text
        copy_to: agg_fields
        fields:
          raw:
            type: keyword
      scientific_lineage: {type: text, copy_to: agg_fields}
      domain: {type: keyword, copy_to: agg_fields}
      kingdom: {type: keyword, copy_to: agg_fields}
      parent_taxon_ref: {type: keyword}
      genetic_code: {type: integer}
      aliases: {type: keyword, copy_to: agg_fields}

  "tree_1":
    global_mappings: [ws_auth, ws_object]
    properties:
      tree_name: {type: keyword, copy_to: agg_fields}
      type: {type: keyword, copy_to: agg_fields}
      labels:
        type: nested
        properties:
          node_id: {type: text}
          label: {type: text, copy_to: agg_fields}

  "attribute_mapping_1":
    global_mappings: [ws_subobject, ws_auth, ws_object]
    properties:
      attributes: {type: keyword, copy_to: agg_fields}
      attribute_ontology_ids: {type: keyword, copy_to: agg_fields}
      attribute_units: {type: keyword}
      attribute_unit_ontology_ids: {type: keyword}
      attribute_values: {type: keyword}
      attribute_value_ontology_ids: {type: keyword}
      instances: {type: object}
      num_attributes: {type: integer}
      num_instances: {type: integer}

  "matrix_1":
    global_mappings: [ws_auth, ws_object]
    properties:
      matrix_type: {type: keyword}
      row_attributes: {type: keyword}
      col_attributes: {type: keyword}
      row_attribute_ontology_ids: {type: keyword}
      col_attribute_ontology_ids: {type: keyword}
      row_attribute_values: {type: keyword}
      col_attribute_values: {type: keyword}
      row_ids: {type: keyword}
      col_ids: {type: keyword}
      num_rows: {type: integer}
      num_columns: {type: integer}
      attributes: {type: keyword}

  "genomeset_1":
    global_mappings: [ws_auth, ws_object]
    properties:
      genomes:
        type: object
        properties:
          genome_ref: {type: keyword}
          label: {type: keyword, copy_to: agg_fields}
      description: {type: text, copy_to: agg_fields}

  "annotated_metagenome_assembly_1":
    global_mappings: [ws_auth, ws_object]
    properties:
      size: {type: integer}
      source_id: {type: keyword}
      source: {type: keyword, copy_to: agg_fields}
      gc_content: {type: float}
      warnings: {type: keyword}
      num_contigs: {type: integer}
      mean_contig_length: {type: float}
      external_source_origination_date: {type: keyword}
      original_source_file_name: {type: keyword}
      environment: {type: keyword}
      num_features: {type: integer}
      publication_authors: {type: keyword, copy_to: agg_fields}
      publication_titles: {type: keyword, copy_to: agg_fields}
      molecule_type: {type: keyword}
      assembly_ref: {type: keyword}
      notes: {type: text, copy_to: agg_fields}

  "annotated_metagenome_assembly_2":
    global_mappings: [ws_auth, ws_object]
    properties:
      size: {type: long}
      source_id: {type: keyword}
      source: {type: keyword, copy_to: agg_fields}
      gc_content: {type: float}
      warnings: {type: text}
      num_contigs: {type: integer}
      mean_contig_length: {type: float}
      external_source_origination_date: {type: keyword}
      original_source_file_name: {type: keyword}
      environment: {type: keyword}
      num_features: {type: integer}
      publication_authors: {type: keyword, copy_to: agg_fields}
      publication_titles: {type: keyword, copy_to: agg_fields}
      molecule_type: {type: keyword}
      assembly_ref: {type: keyword}
      notes: {type: text, copy_to: agg_fields}

  "annotated_metagenome_assembly_features_1":
    global_mappings: [ws_subobject, ws_auth, ws_object]
    properties:
      id: {type: keyword}
      type: {type: keyword, copy_to: agg_fields}
      size: {type: integer}
      contig_ids: {type: keyword, copy_to: agg_fields}
      starts: {type: integer}
      strands: {type: keyword}
      stops: {type: integer}
      functions: {type: keyword}
      functional_descriptions: {type: keyword}
      warnings: {type: keyword}
      parent_gene: {type: keyword}
      inference_data: {type: keyword}
      dna_sequence: {type: text}
      gc_content: {type: float}
      annotated_metagenome_assembly_size: {type: integer}
      annotated_metagenome_assembly_num_features: {type: integer}
      annotated_metagenome_assembly_num_contigs: {type: integer}
      annotated_metagenome_assembly_gc_content: {type: float}

  "annotated_metagenome_assembly_features_2":
    global_mappings: [ws_subobject, ws_auth, ws_object]
    properties:
      id: {type: keyword}
      type: {type: keyword, copy_to: agg_fields}
      size: {type: long}
      contig_ids: {type: keyword, copy_to: agg_fields}
      starts: {type: integer}
      strands: {type: keyword}
      stops: {type: integer}
      functions: {type: text}
      functional_descriptions: {type: text}
      warnings: {type: text}
      parent_gene: {type: keyword}
      inference_data: {type: keyword}
      dna_sequence: {type: keyword}
      gc_content: {type: float}
      annotated_metagenome_assembly_size: {type: long}
      annotated_metagenome_assembly_num_features: {type: integer}
      annotated_metagenome_assembly_num_contigs: {type: integer}
      annotated_metagenome_assembly_gc_content: {type: float}

  "annotated_metagenome_assembly_version_1":
    global_mappings: [ws_auth, ws_object]
    properties:
      size: {type: integer}
      source_id: {type: keyword}
      source: {type: keyword, copy_to: agg_fields}
      gc_content: {type: float}
      warnings: {type: keyword}
      num_contigs: {type: integer}
      mean_contig_length: {type: float}
      external_source_origination_date: {type: keyword}
      original_source_file_name: {type: keyword}
      environment: {type: keyword}
      num_features: {type: integer}
      publication_authors: {type: keyword, copy_to: agg_fields}
      publication_titles: {type: keyword, copy_to: agg_fields}
      molecule_type: {type: keyword}
      assembly_ref: {type: keyword}
      notes: {type: text, copy_to: agg_fields}

  "annotated_metagenome_assembly_version_2":
    global_mappings: [ws_auth, ws_object]
    properties:
      size: {type: long}
      source_id: {type: keyword}
      source: {type: keyword, copy_to: agg_fields}
      gc_content: {type: float}
      warnings: {type: text}
      num_contigs: {type: integer}
      mean_contig_length: {type: float}
      external_source_origination_date: {type: keyword}
      original_source_file_name: {type: keyword}
      environment: {type: keyword}
      num_features: {type: integer}
      publication_authors: {type: keyword, copy_to: agg_fields}
      publication_titles: {type: keyword, copy_to: agg_fields}
      molecule_type: {type: keyword}
      assembly_ref: {type: keyword}
      notes: {type: text, copy_to: agg_fields}

  "annotated_metagenome_assembly_features_version_1":
    global_mappings: [ws_subobject, ws_auth, ws_object]
    properties:
      id: {type: keyword}
      type: {type: keyword, copy_to: agg_fields}
      size: {type: integer}
      contig_ids: {type: keyword, copy_to: agg_fields}
      starts: {type: integer}
      strands: {type: keyword}
      stops: {type: integer}
      functions: {type: keyword, copy_to: agg_fields}
      functional_descriptions: {type: keyword, copy_to: agg_fields}
      warnings: {type: keyword}
      parent_gene: {type: keyword}
      inference_data: {type: keyword}
      dna_sequence: {type: text}
      gc_content: {type: float}
      annotated_metagenome_assembly_size: {type: integer}
      annotated_metagenome_assembly_num_features: {type: integer}
      annotated_metagenome_assembly_num_contigs: {type: integer}
      annotated_metagenome_assembly_gc_content: {type: float}

  "annotated_metagenome_assembly_features_version_2":
    global_mappings: [ws_subobject, ws_auth, ws_object]
    properties:
      id: {type: keyword}
      type: {type: keyword, copy_to: agg_fields}
      size: {type: long}
      contig_ids: {type: keyword, copy_to: agg_fields}
      starts: {type: integer}
      strands: {type: keyword}
      stops: {type: integer}
      functions: {type: text, copy_to: agg_fields}
      functional_descriptions: {type: text, copy_to: agg_fields}
      warnings: {type: text}
      parent_gene: {type: keyword}
      inference_data: {type: keyword}
      dna_sequence: {type: keyword}
      gc_content: {type: float}
      annotated_metagenome_assembly_size: {type: long}
      annotated_metagenome_assembly_num_features: {type: integer}
      annotated_metagenome_assembly_num_contigs: {type: integer}
      annotated_metagenome_assembly_gc_content: {type: float}

  "indexing_errors_1":
    properties:
      evtype: {type: keyword}
      wsid: {type: integer}
      objid: {type: integer}
      error: {type: text}

  "indexer_messages_1":
    properties:
      user: {type: keyword}
      wsid: {type: integer}
      objid: {type: integer}
      ver: {type: integer}
      time: {type: date}
      evtype: {type: keyword}
      objtype: {type: keyword}
      perm: {type: keyword}
      permusers: {type: keyword}

  "sample_set_1":
    global_mappings: [ws_auth, ws_object]
    properties:
      description: {type: text}
      sample_ids: {type: keyword}
      sample_names: {type: keyword}
      sample_versions: {type: integer}

  "sample_set_version_1":
    global_mappings: [ws_auth, ws_object]
    properties:
      description: {type: text}
      sample_ids: {type: keyword}
      sample_names: {type: keyword}
      sample_versions: {type: integer}

  "sample_1":
    global_mappings: [ws_auth, ws_object]
    properties:
      save_date: {type: text}
      sample_version: {type: integer}
      name: {type: keyword}
      parent_id: {type: keyword}
      node_id: {type: keyword}
      sample_name: {type: text}
      material: {type: text}
      field_name_informal_classification: {type: text}
      location_description: {type: text}
      locality_description: {type: text}
      collection_method: {type: text}
      purpose: {type: text}
      navigation_type: {type: text}
      primary_physiographic_feature: {type: text}
      name_of_physiographic_feature: {type: text}
      field_program_cruise: {type: text}
      collector_chief_scientist: {type: text}
      collection_date_precision: {type: text}
      current_archive: {type: text}
      related_identifiers: {type: text}
      platform_type: {type: text}
      zone: {type: text}
      state_province: {type: text}
      original_archive_contact: {type: text}
      classification: {type: text}
      vertical_datum: {type: text}
      original_archive: {type: text}
      platform_name: {type: text}
      collection_time_end: {type: text}
      county: {type: text}
      size_unit: {type: text}
      age_unit: {type: text}
      locality: {type: text}
      sample_description: {type: text}
      collection_method_description: {type: text}
      other_names: {type: text}
      geological_unit: {type: text}
      collector_chief_scientist_address: {type: text}
      size: {type: text}
      launch_platform_name: {type: text}
      depth_scale: {type: text}
      country: {type: text}
      city_township: {type: text}
      sub-object_type: {type: text}
      launch_id: {type: text}
      id: {type: text}
      elevation_unit: {type: text}
      elevation_start: {type: text}
      latitude: {type: text}
      collection_date: {type: text}
      str:degrees: {type: text}
      longitude: {type: text}
      age_min: {type: text}
      age_max: {type: text}
      geological_age: {type: text}
      collection_date_precision: {type: text}
      collection_date_end: {type: text}
      elevation_end: {type: text}
      depth_in_core_max: {type: text}
      depth_in_core_min: {type: text}
      coordinate_precision?: {type: float}
      current_archive_contact: {type: keyword}
      easting_m: {type: float}
      elevation_unit: {type: float}
      igsn: {type: keyword}
      latitude_end: {type: float}
      longitude_end: {type: float}
      northing_m: {type: float}
      parent_igsn: {type: keyword}
      relation_type: {type: text}
      release_date: {type: keyword}
      sampleid: {type: keyword}
      experiment_name: {type: keyword}
      area_name: {type: keyword}
      well_name: {type: keyword}
      environmental_package: {type: text}
      description: {type: text}
      date: {type: text}
      time_zone: {type: text}
      geological_zone: {type: text}
      recovery_factor: {type: text}
      method: {type: text}
      fraction: {type: text}
      replicate: {type: text}
      maturation_time: {type: text}
      treatment: {type: text}
      temperature_celsius: {type: text}
      moisture: {type: text}
      pore_water_extraction_microliters: {type: text}
      conductivity_ms_cm: {type: text}
      dapi_cell_count_cells_g: {type: text}
      dna_picogreen_total_ng: {type: text}
      total_carbon_mg_g_dry_weight: {type: text}
      biomass_carbon_mg_g: {type: text}
      total_nitrogen_mg_g_dry_weight: {type: text}
      leucine_activity_ngc_day_cell: {type: text}
      functional_area: {type: text}
      type_of_well: {type: text}
      ground_elevation_ft_amsl: {type: text}
      installation_method: {type: text}
      boring_ft_bgs: {type: text}
      boring_refusal: {type: text}
      boring_diameter_in: {type: text}
      screen_type: {type: text}
      well_casing_type: {type: text}
      well_casing_od_in: {type: text}
      well_casing_id_in: {type: text}
      drive_casing_type: {type: text}
      drive_casing_id_in: {type: text}
      drive_casing_od_in: {type: text}
      drive_casing_start_depth_ft_bgs: {type: text}
      drive_casing_end_depth_ft_bgs: {type: text}
      packing_type: {type: text}
      packing_depth_start_ft_bgs: {type: text}
      packing_depth_end_ft_bgs: {type: text}
      topofweatheredbedrock_ft_bgs: {type: text}
      topoffreshbedrock_ft_bgs: {type: text}
      aquifer: {type: text}
      fractures_cavities_waterbreaks: {type: text}
      other_name: {type: text}
      screened: {type: text}
      open: {type: text}
      well_status: {type: text}
      condition: {type: text}
      origination_or_plug_abandon: {type: text}
      min_water_level_ft_amsl: {type: text}
      average_water_level_ft_amsl: {type: text}
      max_water_level_ft_amsl: {type: text}
      upper_seal_type: {type: text}
      upper_seal_start_depth_ft_bgs: {type: text}
      upper_seal_end_depth_ft_bgs: {type: text}
      lower_seal_type_ft_bgs: {type: text}
      lower_seal_start_depth_ft_bgs: {type: text}
      lower_seal_end_depth_ft_bgs: {type: text}
      open_casing_type: {type: text}
      open_casing_od_in: {type: text}
      open_casing_id_in: {type: text}
      open_casing_depth_ft_bgs: {type: text}
      open_hole_diameter_in: {type: text}
      open_hole_depth_ft_bgs: {type: text}
      open_interval_start_depth_ft_bgs: {type: text}
      open_interval_end_depth_ft_bgs: {type: text}
      open_interval_diameter_in: {type: text}
      rock_formation: {type: text}
      depth: {type: text}
      elevation: {type: text}
      time: {type: text}
      timezone: {type: text}
      env_package: {type: text}
      continent: {type: text}
      region: {type: text}
      biome: {type: text}
      feature: {type: text}
      aodc_cells_g: {type: float}
      boncat_activity_cell_g: {type: float}
      depth_cm_bgs: {type: float}
      filter_micron: {type: float}
      organic_carbon_mg_g_dry_weight: {type: float}
      ph: {type: float}
      redox_potential_?: {type: float}
      screen_bottom_elevation_ft_amsl: {type: float}
      screen_end_depth_ft_bgs: {type: float}
      screen_start_depth_ft_bgs: {type: float}
      screen_top_elevation_ft_amsl: {type: float}
      screened_interval_ft: {type: float}
      top_of_casing_elevation_ft_amsl: {type: float}
      top_of_casing_stickup_ft: {type: float}
      well_casing_depth_ft_bgs: {type: float}