Merge pull request larymak#132 from Avnam-ohri/main

Added a Chimera software script for generating webGL images

Author: larymak

Chimera_script/ReadMe.md

@@ -0,0 +1,7 @@
+# scipt for generating Webgl images using chimera visulaization software
+The script works on chimera software for visualizing pdb files of protein structures.
+With this scirpt images of multiple protein pdb files can be generated in webGl format which is not yet avalaible in ChimeraX
+Feel free to modify and add according to need 
+
+## This is working with .pdb files in chimera software
+Used in chimera terminal for python.

Chimera_script/webGL_images.py

@@ -0,0 +1,26 @@
+import os
+import chimera
+import Midas
+from chimera import exports
+from chimera import runCommand as rc # use 'rc' as shorthand for runCommand
+# change to folder with data files
+os.chdir("")
+
+# gather the names of .pdb files in the folder
+file_names = [fn for fn in os.listdir(".") if fn.endswith(".pdb")]
+
+# loop through the files, opening, processing, and closing each in turn
+for fn in file_names:
+	rc("open " + fn)
+	rc("window")
+	rc("ac wb")
+	rc("roll")
+	rc("freeze")
+	rc("ac c2")
+	rc("wait 5")
+	htmlname = fn[:-3] +'.html'
+	exports.doExportCommand("WebGL",htmlname)
+	rc("close all")
+	
+	# save image to a file that ends in .png rather than .pdb
+