unexpected keyword argument

[jlblancopastor]

when running treeCl with these options:
treeCl -i input -f fasta --trees_in trees -r 100 -c mds -m geo -g ml -d dna -o output -t temp -u 11 -a

I get a keyword argument error

Using temporary directory temp
Loading input files
Traceback (most recent call last):
File "/home/jlblancopast/git/treeCl/bin/treeCl", line 443, in
debug=args.e,
TypeError: init() got an unexpected keyword argument 'compression'

It seems that there is a bug in the code

[cpouchon]

Hi,
I am getting the same error message, and I can't run treeCl directly from ipython console as indicated in your "Example Analysis".

[kgori]

@jlblancopastor Thanks for letting me know. The command line interface expects an older version of the library. I'll bring it up to date.

[kgori]

@cpouchon could you give me the details of the error you get when running from the IPython console?

[kdebray]

Hi,
I also get the keyword argument error. Has this bug been fixed ?

Using temporary directory ./temp3/
Loading input files
Traceback (most recent call last):
  File "treeCl", line 443, in <module>
    debug=args.e,
TypeError: __init__() got an unexpected keyword argument 'compression'

[Arraiano-Castilho]

Hi, any advance here? I'm having the same issue.

Using temporary directory Temp
Loading input files
Traceback (most recent call last):
File "/home/user/Software/treeCL/treeCl/bin/treeCl", line 443, in
debug=args.e,
TypeError: init() got an unexpected keyword argument 'compression'

Cheers,
RAC