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DESCRIPTION
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DESCRIPTION
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Package: clonealign
Title: Assigning scRNA-seq to clone-of-origin using copy number from ultra-low-depth scDNA-seq
Version: 1.99.3
Authors@R: person("Kieran", "Campbell", email = "kieranrcampbell@gmail.com", role = c("aut", "cre"))
Description: clonealign assigns single-cell RNA-seq to clones of origin based on copy number data. This is useful when single-cell RNA-seq and DNA-seq are measured (separately) on the same set of cells, clones are inferred based on copy number profiles of the scDNA-seq, and the expression profile of each clone is desired.
Depends: R (>= 3.6.0)
Imports:
methods,
stats,
glue,
SummarizedExperiment,
tensorflow,
progress,
reticulate,
dplyr,
ggplot2,
matrixStats,
R.utils
Suggests:
BiocStyle,
knitr,
rmarkdown,
scater,
testthat,
cowplot,
tidyr,
SingleCellExperiment,
GenomicRanges,
org.Hs.eg.db,
TxDb.Hsapiens.UCSC.hg19.knownGene,
pheatmap
biocViews:
Software,
Transcriptomics,
GeneExpression,
RNASeq,
SingleCell
License: Apache License (== 2.0) | file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.0.2
VignetteBuilder: knitr