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DESCRIPTION

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Package: pomp
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Type: Package
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Title: Statistical Inference for Partially Observed Markov Processes
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Version: 5.9.1.1
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Date: 2024-06-29
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Version: 5.10.0.0
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Date: 2024-07-01
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Authors@R: c(person(given=c("Aaron","A."),family="King",role=c("aut","cre"),email="kingaa@umich.edu",comment=c(ORCID="0000-0001-6159-3207")),
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person(given=c("Edward","L."),family="Ionides",role="aut",comment=c(ORCID="0000-0002-4190-0174")) ,
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person(given="Carles",family="Bretó",role="aut",comment=c(ORCID="0000-0003-4695-4902")),
@@ -29,7 +29,7 @@ LazyData: true
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BugReports: https://github.com/kingaa/pomp/issues/
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Encoding: UTF-8
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Roxygen: list(roclets = c("collate", "namespace", "rd"))
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RoxygenNote: 7.3.1
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RoxygenNote: 7.3.2
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Collate:
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'package.R'
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'pstop.R'

tests/R_v_C.Rout

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> ## ----comparison----------------------------------------------------------
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> system.time(simulate(gompertz,nsim=10000,format="arrays"))
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user system elapsed
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5.506 0.115 5.621
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5.458 0.092 5.552
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> system.time(simulate(Gompertz,nsim=10000,format="arrays"))
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user system elapsed
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0.167 0.004 0.171
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0.152 0.008 0.160
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> system.time(pfilter(gompertz,Np=1000))
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user system elapsed
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0.583 0.000 0.582
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0.557 0.016 0.573
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> system.time(pfilter(Gompertz,Np=1000))
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user system elapsed
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0.029 0.000 0.029
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0.028 0.000 0.028
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>
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> dev.off()
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null device

tests/abc.Rout.save

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tests/baddm.Rout.save

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tests/bake.Rout.save

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tests/basic_probes.Rout.save

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tests/betabinom.Rout.save

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tests/blowflies.Rout.save

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tests/bsmc2.Rout.save

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tests/bsplines1.Rout.save

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tests/bsplines2.Rout.save

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tests/concat.Rout.save

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tests/covmat.Rout.save

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tests/csnippet.Rout.save

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tests/dacca.Rout.save

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tests/dinit.Rout.save

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tests/dp.Rout.save

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tests/dprocess.Rout.save

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tests/ebola.Rout.save

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tests/emeasure.Rout.save

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tests/eulermultinom.Rout.save

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tests/flow.Rout.save

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tests/gillespie.Rout.save

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tests/gompertz.Rout.save

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tests/helpers.Rout.save

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tests/hitch.Rout.save

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tests/issue109.Rout.save

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tests/issue56.Rout.save

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tests/kalman.Rout.save

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tests/kalman2.Rout.save

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tests/link.Rout.save

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tests/load.Rout.save

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tests/logmeanexp.Rout.save

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tests/lookup.Rout.save

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tests/map.Rout.save

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tests/mcap.Rout.save

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tests/measure.Rout.save

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tests/mif2.Rout.save

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tests/mif2_index.Rout.save

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tests/mif2_kf.Rout.save

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tests/nlf.Rout.save

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tests/ou2.Rout.save

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tests/parmat.Rout.save

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tests/pmcmc.Rout.save

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tests/pomp.Rout.save

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tests/pomp_fun.Rout.save

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tests/pomp_methods.Rout.save

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