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update for R 4.3.3
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‎R/objfun.R

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@@ -73,7 +73,7 @@ setIs(
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as(from@env$object,"pomp")
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},
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replace= function (from, to, value) {
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pStop(who=-2L,"cannot replace the pomp object in a stateful objective function.")
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pStop(who=-4L,"cannot replace the pomp object in a stateful objective function.")
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}
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)
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‎inst/doc/index.html

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‎tests/R_v_C.Rout

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R version 4.3.2 (2023-10-31) -- "Eye Holes"
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Copyright (C) 2023 The R Foundation for Statistical Computing
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R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
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Copyright (C) 2024 The R Foundation for Statistical Computing
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Platform: x86_64-pc-linux-gnu (64-bit)
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R is free software and comes with ABSOLUTELY NO WARRANTY.
@@ -109,16 +109,16 @@ Type 'q()' to quit R.
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> ## ----comparison----------------------------------------------------------
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> system.time(simulate(gompertz,nsim=10000,format="arrays"))
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user system elapsed
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7.361 0.042 7.403
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6.806 0.114 6.921
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> system.time(simulate(Gompertz,nsim=10000,format="arrays"))
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user system elapsed
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0.160 0.004 0.165
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0.161 0.001 0.162
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> system.time(pfilter(gompertz,Np=1000))
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user system elapsed
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0.660 0.012 0.671
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0.642 0.013 0.655
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> system.time(pfilter(Gompertz,Np=1000))
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user system elapsed
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0.029 0.000 0.029
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0.029 0.001 0.029
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>
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> dev.off()
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null device

‎tests/abc.Rout.save

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Copyright (C) 2024 The R Foundation for Statistical Computing
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R is free software and comes with ABSOLUTELY NO WARRANTY.

‎tests/baddm.Rout.save

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Copyright (C) 2024 The R Foundation for Statistical Computing
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R is free software and comes with ABSOLUTELY NO WARRANTY.

‎tests/bake.Rout.save

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Copyright (C) 2024 The R Foundation for Statistical Computing
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R is free software and comes with ABSOLUTELY NO WARRANTY.

‎tests/basic_probes.Rout.save

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Copyright (C) 2024 The R Foundation for Statistical Computing
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R is free software and comes with ABSOLUTELY NO WARRANTY.

‎tests/betabinom.Rout.save

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Copyright (C) 2024 The R Foundation for Statistical Computing
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Platform: x86_64-pc-linux-gnu (64-bit)
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R is free software and comes with ABSOLUTELY NO WARRANTY.

‎tests/blowflies.Rout.save

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Copyright (C) 2024 The R Foundation for Statistical Computing
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R is free software and comes with ABSOLUTELY NO WARRANTY.

‎tests/bsmc2.Rout.save

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Copyright (C) 2024 The R Foundation for Statistical Computing
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R is free software and comes with ABSOLUTELY NO WARRANTY.

‎tests/bsplines1.Rout.save

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‎tests/bsplines2.Rout.save

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R is free software and comes with ABSOLUTELY NO WARRANTY.

‎tests/concat.Rout.save

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‎tests/covmat.Rout.save

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‎tests/csnippet.Rout.save

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‎tests/dacca.Rout.save

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‎tests/defunct.Rout.save

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‎tests/dinit.Rout.save

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R is free software and comes with ABSOLUTELY NO WARRANTY.

‎tests/dp-01.png

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‎tests/dp-02.png

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‎tests/dp-03.png

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‎tests/dp.Rout.save

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‎tests/dprocess.Rout.save

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‎tests/ebola.Rout.save

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‎tests/emeasure.Rout.save

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‎tests/eulermultinom.Rout.save

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‎tests/flow.Rout.save

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R is free software and comes with ABSOLUTELY NO WARRANTY.

‎tests/gillespie.R

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ggplot(aes(x=time,y=value,color=model))+
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labs(color="",y="reports",title="comparison of implementations")+
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geom_line()+
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theme_bw()+theme(legend.position=c(0.2,0.8))
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theme_bw()+
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theme(
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legend.position="inside",
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legend.position.inside=c(0.2,0.8)
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)
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try(gillespie(rate.fun=rate.fun,v=as.numeric(Vmatrix)))
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w <- Vmatrix

‎tests/gillespie.Rout.save

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@@ -153,7 +153,11 @@ NOTE: The provided object 'nbasis' is available for use by POMP basic components
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+ ggplot(aes(x=time,y=value,color=model))+
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+ labs(color="",y="reports",title="comparison of implementations")+
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+ geom_line()+
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+ theme_bw()+theme(legend.position=c(0.2,0.8))
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+ theme_bw()+
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+ theme(
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+ legend.position="inside",
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+ legend.position.inside=c(0.2,0.8)
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+ )
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>
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> try(gillespie(rate.fun=rate.fun,v=as.numeric(Vmatrix)))
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Error : in 'gillespie': 'v' must be a matrix.

‎tests/gompertz.Rout.save

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‎tests/helpers.Rout.save

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‎tests/hitch.Rout.save

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‎tests/issue109.Rout.save

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‎tests/issue56.Rout.save

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‎tests/kalman.Rout.save

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‎tests/kalman2.Rout.save

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‎tests/link.Rout.save

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‎tests/load.Rout.save

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‎tests/logmeanexp.Rout.save

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‎tests/lookup.Rout.save

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‎tests/map.Rout.save

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‎tests/mcap.Rout.save

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‎tests/measure.Rout.save

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‎tests/mif2.Rout.save

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