pyproject.toml

[build-system]
requires = ["setuptools"]
build-backend = "setuptools.build_meta"

[project]
name = "kleborate"
version = "3.1.0"
description = "Kleborate: a tool for typing and screening pathogen genome assemblies"
readme = "README.md"
requires-python = ">=3.9"
license = {file = "LICENSE"}
authors = [
    {name = "Mary Maranga", email = "gathonimaranga@gmail.com"},
    {name = "Ryan Wick", email = "rrwick@gmail.com"},
    {name = "Kathryn Holt", email = "kat.holt@lshtm.ac.uk"},
]
classifiers = [
    "Development Status :: 4 - Beta",
    "License :: OSI Approved :: GNU General Public License v3 (GPLv3)",
    "Programming Language :: Python :: 3",
    "Topic :: Scientific/Engineering :: Bio-Informatics",
    "Topic :: Scientific/Engineering :: Medical Science Apps.",
    "Intended Audience :: Science/Research"
]
dependencies = ["biopython","numpy","dna_features_viewer","kaptive","mash"]

[project.optional-dependencies]
test = ["pytest", "pytest-mock"]  # needed for running automated tests

[project.urls]
homepage = "https://github.com/klebgenomics/Kleborate"
documentation = "https://kleborate.readthedocs.io/"
repository = "https://github.com/klebgenomics/Kleborate"

[project.scripts]
kleborate = "kleborate.__main__:main"  # create an executable file named "kleborate"

[tool.setuptools.packages.find]
where = ["."]
include = ["kleborate", "kleborate.shared", "kleborate.modules", "kleborate.modules.*"]
exclude = ["kleborate.modules.template"]

[tool.setuptools.package-data]
"*" = ["data/*"]  # many modules include data directories which need to be installed as well