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An error occurred during STAR indexing #50

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yue19761023 opened this issue Oct 6, 2022 · 0 comments
Open

An error occurred during STAR indexing #50

yue19761023 opened this issue Oct 6, 2022 · 0 comments

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@yue19761023
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Starting job.
Extracting /rnadetector/ws/storage/app/public/jobs/15/hg38.fa.gz
Indexing reference for STAR.
Oct 04 13:22:14 ..... started STAR run
Oct 04 13:22:14 ... starting to generate Genome files
Oct 04 13:24:15 ... starting to sort Suffix Array. This may take a long time...
Oct 04 13:24:56 ... sorting Suffix Array chunks and saving them to disk...
/rnadetector/scripts/star_index.sh: line 67: 377 Killed STAR --runThreadN "$THREADS" --runMode genomeGenerate $OTHER_ARGS --genomeDir "$REFERENCE_DIR" --genomeFastaFiles "$FASTA_FILE"
An error occurred during indexing!
Reference sequence indexed for STAR.
Job completed!

Could anyone help me resolve this problem? Your time and effort will be greatly appreciated!
Thank you very much.

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