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AttributeError: 'ProteinAnalysis' object has no attribute 'molar_extinction_coefficient' #25

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SamuelGreenrod opened this issue Jun 24, 2022 · 1 comment

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@SamuelGreenrod
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Hi there,

I'm trying to run PhageBoost but keep getting the error message: AttributeError: 'ProteinAnalysis' object has no attribute 'molar_extinction_coefficient'. Please could you help me try to figure out where this is going wrong? I'm running the code:

conda create -y -n PhageBoost-env python=3.7
conda activate PhageBoost-env
pip install git+https://github.com/ku-cbd/PhageBoost
PhageBoost -f file.fna -o results

Thanks!

@SamuelGreenrod
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Update: I am getting this same error message with the following code:

conda create -y -n PhageBoost-env python=3.7
conda activate PhageBoost-env
git clone https://github.com/ku-cbd/PhageBoost
cd PhageBoost
python setup.py bdist_wheel
pip install --user .
PhageBoost -f example/data/NC_000907.fasta.gz -o results

Thanks.

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