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Hi, I would like to know how I should modify the code to reproduce the algorithm if my dataset is not stored in 10x format but as CSV files. My expression matrix has barcodes as the index and gene names as the columns. Additionally, I have prepared a gene_ids file corresponding to the gene names, as well as a spatial position file named tissue_positions_list.csv.
Hi, I would like to know how I should modify the code to reproduce the algorithm if my dataset is not stored in 10x format but as CSV files. My expression matrix has barcodes as the index and gene names as the columns. Additionally, I have prepared a gene_ids file corresponding to the gene names, as well as a spatial position file named tissue_positions_list.csv.
Thanks! @kuanglab
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