Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

zarr 3 released today is not compatible with lamindb #2335

Open
Koncopd opened this issue Jan 9, 2025 · 5 comments
Open

zarr 3 released today is not compatible with lamindb #2335

Koncopd opened this issue Jan 9, 2025 · 5 comments
Assignees
@Koncopd
Labels
🐛 bug

Comments

@Koncopd
Copy link
Member

Koncopd commented Jan 9, 2025

Add a description

subj
@Koncopd Koncopd self-assigned this Jan 9, 2025
@Koncopd
Copy link
Member Author

Koncopd commented Jan 9, 2025

Added the upper bound here for now #2334

@Koncopd
Copy link
Member Author

Koncopd commented Jan 9, 2025

Uhhh, the new API is very different, it doesn't support a general mutable mapping and thus requires a ton of work to update.

@Koncopd
Copy link
Member Author

Koncopd commented Jan 9, 2025

https://zarr.readthedocs.io/en/latest/user-guide/v3_migration.html#getting-ready-for-3-0

@Koncopd
Copy link
Member Author

Koncopd commented Jan 9, 2025

Another problem is that now installing zarr v3 crushes lamindb import.
image
unfortunately can't do much here because this comes from anndata.

@Koncopd
Copy link
Member Author

Koncopd commented Jan 9, 2025

Reported here scverse/anndata#1817

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@Koncopd Koncopd

Labels
🐛 bug
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@Koncopd