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In get-started, use .var to annotate genes #103

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falexwolf opened this issue Nov 22, 2024 · 3 comments
Closed

In get-started, use .var to annotate genes #103

falexwolf opened this issue Nov 22, 2024 · 3 comments
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documentation Improvements or additions to documentation

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@falexwolf
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@rcannood already has the line of code that needs to be added. This is just so that we don't forget.
@falexwolf falexwolf mentioned this issue Nov 25, 2024
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@falexwolf falexwolf changed the title In get-started, also use .var to annotate genes In get-started, use .var to annotate genes Nov 25, 2024
@falexwolf falexwolf assigned falexwolf and unassigned rcannood Nov 25, 2024
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I took this one, @rcannood.

@lazappi lazappi added the documentation Improvements or additions to documentation label Jan 7, 2025
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lazappi commented Jan 7, 2025

Has this been done already?

@falexwolf
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Yes:

laminr/vignettes/laminr.Rmd

Lines 134 to 136 in a555bf2

seurat_obj[["RNA"]] <- AddMetaData(
GetAssay(seurat_obj), adata$var
)

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@rcannood @lazappi @falexwolf