noxfile.py

import nox
from laminci.nox import SYSTEM, build_docs, run, run_pre_commit, run_pytest

nox.options.default_venv_backend = "none"


@nox.session
def lint(session: nox.Session) -> None:
    run_pre_commit(session)


@nox.session
def install(session: nox.Session) -> None:
    run(
        session,
        f"uv pip install {SYSTEM} git+https://github.com/laminlabs/lamindb-setup",
    )
    run(
        session,
        f"uv pip install {SYSTEM} git+https://github.com/laminlabs/lnschema-core",
    )
    run(session, f"uv pip install {SYSTEM} git+https://github.com/laminlabs/bionty")
    run(
        session,
        f"uv pip install {SYSTEM} git+https://github.com/laminlabs/lamindb",
    )
    run(session, f"uv pip install {SYSTEM} .[dev]")


@nox.session
def test(session: nox.Session) -> None:
    run_pytest(session, coverage=False)


@nox.session
def docs(session: nox.Session) -> None:
    run(session, "lamin init --storage ./docsbuild --schema bionty,wetlab")
    build_docs(session, strict=True)