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Does this already happen on restart? It looks like the task manager is just loading up the old database file, which should still have the submit and job queue data, unless the whole database gets deleted.
I did some testing with examples/clamr-ffmpeg-build and it looks like the task manager is able to recover the submit/job queues after failures and successfully update task states. I'm going to close this for now.
Pieces broken up from #614
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