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example_crosslink.html
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<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
<html>
<head>
<meta http-equiv="Content-Type" content="text/html; charset=utf-8">
<title>xiSPEC Spectrum Viewer</title>
<script type="text/javascript" src="dist/xispec.js"></script>
</head>
<body>
<h1>xiSPEC Example</h1>
<!-- PLACE HOLDER DIV FOR THE SPECTRUM -->
<div id="xispec_wrapper" style='height:750px;'></div>
<script type="text/javascript">
var sequence1 = "QNCcarbamidomethylELFEQLGEYKFQNALLVR";
var sequence2 = "KQTALVELVK";
var linkPos1 = 12;
var linkPos2 = 0;
var crossLinkerModMass = 138.06808;
var modifications = [
{id: 'carbamidomethyl', mass: 57.021464, aminoAcids: ['K', 'H', 'C', 'D', 'E', 'S', 'T', 'Y']}
];
var fragmentTolerance = {"tolerance": '20.0', 'unit': 'ppm'};
var ionTypes = "peptide;b;y";
var precursorCharge = 4;
var losses = [{ id: 'H2O', specificity: ['D', 'S', 'T', 'E', 'CTerm'], mass: 18.01056027}];
var peaks =
[
[104.31995, 1077.574],
[110.07077, 1154.813],
[116.98479, 1330.395],
[120.08031, 6500.032],
[126.48923, 1215.806],
[128.27737, 1158.139],
[129.10165, 3797.562],
[130.08585, 2611.797],
[136.07513, 9154.673],
[136.52252, 1412.883],
[137.77832, 1248.443],
[147.11224, 8205.349],
[158.09193, 2467.716],
[167.16905, 1281.443],
[167.72473, 2512.719],
[171.11246, 2653.337],
[175.11104, 1862.324],
[175.11876, 29656.39],
[179.04727, 1394.587],
[187.07079, 4281.374],
[198.08717, 1476.271],
[199.0706, 5520.419],
[209.61055, 1414.925],
[213.0461, 2471.667],
[222.14781, 1353.332],
[226.08147, 6771.714],
[239.17575, 2284.68],
[240.097, 3375.53],
[240.15744, 2008.335],
[242.14937, 3585.241],
[243.10825, 10229.1],
[246.18063, 7251.365],
[246.89699, 2236.643],
[248.7056, 2449.125],
[258.10706, 4221.326],
[274.18701, 18420.54],
[275.08005, 2938.509],
[277.11771, 5736.08],
[290.07974, 4378.123],
[296.10522, 2492.893],
[300.15506, 2448.349],
[340.16962, 2509.36],
[340.73346, 2182.615],
[341.21759, 2547.286],
[342.20258, 2422.252],
[348.41574, 2648.273],
[357.13498, 3216.578],
[359.2645, 7292.44],
[386.11166, 11693.4],
[387.27063, 24152.21],
[395.49078, 2912.691],
[403.1377, 3267.656],
[403.16367, 3582.586],
[404.12137, 2730.727],
[405.17575, 9322.017],
[424.1459, 9205.194],
[429.55704, 2408.791],
[461.19131, 5076.191],
[470.29428, 3192.457],
[475.79361, 2516.352],
[480.78479, 2448.314],
[488.30606, 12862.48],
[491.80048, 3859.572],
[500.35492, 17901.03],
[501.35315, 3110.344],
[515.1546, 26967.78],
[516.15747, 3835.899],
[518.26099, 2913.609],
[532.18359, 7357.03],
[571.39191, 15435.13],
[572.3985, 3353.948],
[582.23248, 2752.083],
[587.37537, 7296.048],
[588.37811, 2720.51],
[627.25574, 9371.27],
[628.23877, 20446],
[629.23883, 4545.791],
[645.2644, 12698.54],
[646.26727, 4148.49],
[646.69763, 2624.702],
[664.27466, 3701.32],
[675.4231, 26154.19],
[675.92688, 14309.2],
[685.43524, 33691.25],
[686.43536, 7987.579],
[697.93274, 2760.535],
[698.14093, 2936.794],
[700.46216, 8753.339],
[703.71136, 2901.061],
[752.29633, 3013.967],
[757.29669, 2939.461],
[771.49506, 7482.976],
[772.49866, 3670.996],
[775.30634, 11380.93],
[776.30927, 3229.043],
[779.46002, 4339.276],
[785.47827, 9085.49],
[785.81061, 10337.16],
[786.14398, 8964.351],
[792.33325, 9252.149],
[813.49353, 32491.92],
[814.49664, 9612.339],
[839.83093, 9984.145],
[840.16638, 13167.5],
[840.5072, 11287.34],
[860.849, 6782.225],
[861.354, 5912.51],
[872.54669, 23071.12],
[873.54407, 8425.937],
[896.18268, 5612.033],
[901.85406, 9202.754],
[902.19049, 15286.45],
[902.51862, 6595.857],
[939.88562, 12078.4],
[940.21979, 6483.617],
[958.51086, 6451.497],
[960.56226, 51754.06],
[961.56635, 17897],
[963.01599, 6855.909],
[966.54956, 8709.602],
[976.55328, 5820.477],
[982.57495, 6096.123],
[982.9024, 8249.664],
[1000.6061, 8420.873],
[1019.9094, 4103.637],
[1025.9185, 4796.463],
[1031.4269, 8061.255],
[1032.415, 5601.393],
[1049.4302, 6031.223],
[1058.0831, 4040.31],
[1074.2628, 6785.071],
[1074.6099, 9404.287],
[1074.9431, 6890.315],
[1089.2368, 3186.522],
[1117.2383, 6506.146],
[1117.549, 3486.894],
[1131.1254, 3693.632],
[1145.4979, 5418.609],
[1146.4889, 3109.448],
[1159.1455, 4111.549],
[1164.578, 3069.252],
[1173.6404, 4371.271],
[1175.0638, 2968.297],
[1177.71, 19721.8],
[1178.2181, 21935.26],
[1178.7131, 11562.45],
[1219.5378, 3828.89],
[1228.16, 3277.68],
[1230.1819, 2637.82],
[1230.6969, 2742.482],
[1232.683, 3974.163],
[1247.6014, 2701.705],
[1259.2417, 12618.17],
[1259.7408, 18768.35],
[1260.2473, 11230.91],
[1276.6573, 2924.339],
[1297.802, 2878.605],
[1323.7585, 5094.052],
[1324.2655, 9168.657],
[1324.7677, 5134.531],
[1343.7582, 4327.846],
[1344.2625, 6555.599],
[1348.5706, 4233.055],
[1349.8336, 5421.899],
[1350.85, 4247.255],
[1352.2732, 35041.97],
[1352.777, 36789.91],
[1353.2766, 22782.3],
[1353.7819, 5184.604],
[1408.8195, 6281.371],
[1409.3123, 11249.9],
[1409.8177, 6666.579],
[1440.3541, 2846.292],
[1472.8455, 3044.814],
[1473.3473, 2795.796],
[1473.8357, 2571.117],
[1511.6503, 3107.592],
[1538.3694, 3421.022],
[1550.6224, 3378.353],
[1571.4528, 3144.356],
[1611.4226, 3504.665],
[1617.9039, 2570.067],
[1680.3469, 2501.668],
[1710.666, 2386.354],
[1729.0896, 2368.488],
[1744.2289, 2579.276],
[1946.8798, 2426.515],
[1991.0004, 2241.505]
];
// $(document).ready(function () {
window.xiSPEC = xispec.createApp({targetDiv: "xispec_wrapper"});
window.xiSPEC.setData({
sequence1: sequence1,
sequence2: sequence2,
linkPos1: linkPos1,
linkPos2: linkPos2,
crossLinkerModMass: crossLinkerModMass,
modifications: modifications,
precursorCharge: precursorCharge,
fragmentTolerance: fragmentTolerance,
ionTypes: ionTypes,
losses: losses,
peakList: peaks
});
// });
</script>
</body>
</html>