This is no longer updated! Development is now happening on https://github.com/Rappsilber-Laboratory/xiSPEC_ms_parser
Back-end parser for xiSPEC mass spectrometry visualization tool.
python2.7
virtualenv
sqlite3
Clone git repository into your web-server directory (e.g. /var/www/html):
git clone https://github.com/Rappsilber-Laboratory/xiSPEC_ms_parser.git
cd into the repository:
cd xiSPEC_ms_parser
Create uploads directory:
mkdir ../uploads
Change owner of uploads directory to www-data:
sudo chown www-data:www-data ../uploads/
Change owner of log directory to www-data:
sudo chown www-data:www-data log
Create python virtualenv:
virtualenv --no-site-packages python_env
Activate virtualenv:
source python_env/bin/activate
Install dependencies:
pip install -r requirements.txt
pyteomics module has some changes so for the time being you need to reset to HEAD again after installing the dependencies
git reset --hard HEAD
Change owner of dbs directory (and sub directories) to www-data:
sudo chown -R www-data:www-data dbs