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Graphmap2 index in shared memory #17

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lpryszcz opened this issue Dec 18, 2020 · 0 comments
Open

Graphmap2 index in shared memory #17

lpryszcz opened this issue Dec 18, 2020 · 0 comments

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@lpryszcz
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Hi, would it be possible to share graphmap2 index among multiple instances of the mapper? Something of the sort was available in STAR-mapper.
It'd be super beneficial for applications with on-the-fly mapping (ie. data coming from the sequencer in small batches) or where multiple instances of the mapper need to be launched simultaneously (my case). Creating/loading index for each instance is waste of time and resources, especially for larger references.
Cheers,

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