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First of all, thanks a lot for this great library!
I recently found that pyteomics can't open mzId files created using PeptideShaker. Iterating of the SpectrumIdentificationResult objects never starts without significant CPU usage.
After I manually removed the <Fragmentation>[...]</Fragmentation> tags from the file, everything worked fine.
Kind regards,
Johannes
The text was updated successfully, but these errors were encountered:
jgriss
changed the title
Pyteomics fails to parse mzId files with <FragmentIon> information
Pyteomics fails to parse mzId files with <Fragmentation> information
Mar 22, 2021
Hi,
First of all, thanks a lot for this great library!
I recently found that pyteomics can't open mzId files created using PeptideShaker. Iterating of the SpectrumIdentificationResult objects never starts without significant CPU usage.
After I manually removed the
<Fragmentation>[...]</Fragmentation>
tags from the file, everything worked fine.Kind regards,
Johannes
The text was updated successfully, but these errors were encountered: