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Segmentation fault (core dumped) while running miniasm #73

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ShuChen1986 opened this issue Aug 21, 2019 · 1 comment
Open

Segmentation fault (core dumped) while running miniasm #73

ShuChen1986 opened this issue Aug 21, 2019 · 1 comment

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@ShuChen1986
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Hi,
I used minimap2 get a paf file, and then I used miniasm to get the gfa file. It gave me the following error info. Could you give me any suggestions on this?

minimap2 -t 28 -x ava-ont N_all_filt.fq N_all_filt.fq | gzip -1 > ont.paf.gz
miniasm -f ~/scsio/Nanopore/Data/N_all_filt.fq ont.paf.gz > ont.gfa
[M::main] ===> Step 1: reading read mappings <===
/opt/gridview//pbs/dispatcher/mom_priv/jobs/76753.mgr.SC: line 12: 24731 Segmentation fault      (core dumped) ~/app/miniasm-master/miniasm -f ~/scsio/Nanopore/Data/N_all_filt.fq ont.paf.gz > ont.gfa

@ardy20
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ardy20 commented May 13, 2021

I get the same error. Looks that no one takes care of this tool anymore.

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