High Error rate on short read simulation

[Hakuna-Mataha]

Hello,
I am doing schoolwork that requires me to reproduce Figure 1b in the minimap2 paper. I am using this human genome
https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000001405.26/ with simulation by mason2 and analysis by paf tools. I am using papers parameters.

I have attached results from paftools mapeval:
As you see error rates are 50 percent on all brackets. Is something wrong with my method?
Thank you very much

quality_new.txt

[lh3]

What are the exact command lines and input files?

[Hakuna-Mataha]

Here is the code.
mason_simulator --seed 2415 --illumina-prob-mismatch-scale 2.5 --illumina-read-length 150 -ir GCF_000001405.26_GRCh38_genomic.fna -n 10000000 -o tmp-l.fq -or tmp-r.fq -oa tmp.sam
~/k8/k8 ./paftools.js mason2fq tmp.sam | seqtk seq -1 > human_mason_1.fq
~/k8/k8 ./paftools.js mason2fq tmp.sam | seqtk seq -2 > human_mason_2.fq
minimap2 -ax sr GCF_000001405.26_GRCh38_genomic.fna human_mason_1.fq human_mason_2.fq > test.sam
~/k8/k8 paftools.js mapeval test.sam > quality.txt

[Hakuna-Mataha]

Hi,
Are there any updates on this?
Thank you very much

[lh3]

Could you try older k8, not k8-1.0?

[lh3]

Please try paftools.js from github HEAD. Let me know if you still have this problem. Thanks.