mztab_crosscheck_error.properties

c_code_Species=3000
c_original_Species=The column "{0}" value "{1}" should be identified the NCBI entry's name.
c_cause_Species=The human readable species the protein was identified in (this should be the NCBI entry's name)

c_code_Database=3001
c_original_Database=The column "{0}" value "{1}" should be assigned by Miriam.
c_cause_Database=Wherever possible the Miriam (http://www.ebi.ac.uk/miriam) assigned name SHOULD be used.

c_code_Smiles=3002
c_original_Smiles=The column "{0}" value "{1}" should obey a molecules structure of SMILES.
c_cause_Smiles=The molecules structure in the simplified molecular-input line-entry system (SMILES).

c_code_InchiKey=3003
c_original_InchiKey= The column "{0}" value "{1}" should obey the standard InChI key.
c_cause_InchiKey=The standard IUPAC International Chemical Identifier (InChI) Key of the given substance.

c_code_OptionalCVParamColumn=3004
c_original_OptionalCVParamColumn=The column "{0}" value "{1}" should be a valid MS CV Parameter.
c_cause_OptionalCVParamColumn=This can be validated by a call to the OLS web service to validate MS CV Parameter data type.

c_code_CvTermNotAllowed=3005
c_original_CvTermNotAllowed=The cv term "{0}" is not allowed for "{1}". Allowed terms are defined in {2}.
c_cause_CvTermNotAllowed=Cv terms must be allowed for particular elements in the mztab-mappings.xml file.

c_code_CvTermRequired=3006
c_original_CvTermRequired=The cv term "{0}" or children thereof must be reported for "{1}". Allowed terms are defined in {2}.
c_cause_CvTermRequired=A cv term must be reported for particular elements as defined in the provided mapping file.

c_code_CvTermRecommended=3007
c_original_CvTermRecommended=The cv term "{0}" or children thereof should be reported for "{1}". Allowed terms are defined in {2}.
c_cause_CvTermRecommended=A cv term should be reported for particular elements as defined in the provided mapping file.

c_code_CvTermOptional=3008
c_original_CvTermOptional=The cv term "{0}" or children thereof may be reported for "{1}". Allowed terms are defined in {2}.
c_cause_CvTermOptional=A cv term may be reported for particular elements as defined in the provided mapping file.

c_code_CvTermNotInRule=3009
c_original_CvTermNotInRule=The cv term "{0}" is not defined for "{1}". Allowed terms are defined in {2}.
c_cause_CvTermNotInRule=Cv terms must be allowed for particular elements in the mapping file.

c_code_RulePointerObjectNull=3010
c_original_RulePointerObjectNull=The object "{0}" accessed by {1} is {2}, but was null or empty. Allowed terms are defined in {3}.
c_cause_RulePointerObjectNull=An object selected by a cv mapping rule in the mzTab model was null or empty.

c_code_CvTermXor=3011
c_original_CvTermXor=Only one of the provided cv terms for "{1}" {0} be reported. You defined terms "{2}". Allowed terms are defined in {3}.
c_cause_CvTermXor=For a rule with XOR logic, all cv term roots given in the rule are mutually exclusive. Thus, only one cv term or its children can be reported.

c_code_CvTermMalformed=3012
c_original_CvTermMalformed=The cv parameter field "{0}" for parameter "{1}" is "{2}" but should be "{3}" as defined in {4}.
c_cause_CvTermMalformed=The cv parameter fields cvLabel, cvAccession and value must conform to the cv parameter definition.

c_code_CvUndefinedInMetadata=3013
c_original_CvUndefinedInMetadata=The CV with prefix "{0}" for parameter "{1}" MUST be defined in the metadata section! 
c_cause_CvUndefinedInMetadata=Controlled vocabularies used in the mzTab file for cv term definition MUST be defined in the metadata section.

c_code_CvUnused=3014
c_original_CvUnused=The CV with prefix "{0}" was defined but never used. 
c_cause_CvUnused=Controlled vocabularies defined in the mzTab file metadata section SHOULD be used by cv parameters in the file.

c_code_SemanticValidationException=3015
c_original_SemanticValidationException=An exception occurred during semantic validation: "{0}".
c_cause_SemanticValidationException=General message to report exceptions that have occured during semantic validation.