[biocterm] [dev] [WIP] Biocterm backend

[lisancao]

[biocterm] [dev] [WIP] Biocterm backend

Tasks

[ ] create output log
https://github.com/tmux-plugins/tmux-logging
[ ] session loading/restoration and lesson progress log + metadata
https://github.com/tmux-plugins/tmux-continuum
https://github.com/tmux-plugins/tmux-resurrect

[ ] config pointers + file structure for contained installation
https://github.com/tmux-plugins/tpm/blob/master/docs/changing_plugins_install_dir.md

[ ] bash scripting for: install, r-vim, bash-r communication config, pulling system data, .ini files

Resources

tmux plugin manager: https://github.com/tmux-plugins/tpm

[other usability]
https://github.com/tmux-plugins/tmux-pain-control
https://github.com/tmux-plugins/tmux-yank

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Tag can be

biocswirl(related to course material)
biocterm (interface changes)
dev      (developers only)
file     (changes to file and folder structuring) 
rpkg     (r package/usethis and CRAN documentation changes)
feat     (new feature)
fix      (bug fix)
refactor (refactoring code)
style    (formatting, missing semi colons, etc; no code change)
doc      (changes to documentation)
test     (adding or refactoring tests; no production code change)
version  (version bump/new release; no production code change)
dbg      (Changes in debugging code/frameworks; no production code change)
license  (Edits regarding licensing; no production code change)
hack     (Temporary fix to make things move forward; please avoid it)
WIP      (Work In Progress; for intermediate commits to keep patches reasonably sized)

[lisancao]

Progress report:
-created BiocTerm tmux plugin that contains and references plugins that we want to use, actual biocterm.tmux file just runs the scripts we want directly instead of keybinds them, tempfix as there is a lot of unnecessary files and will write the biocterm.tmux plugin from scratch with the features we want + higher customization at a later date

-decided it's easier to remove plugin manager for demo case and just run the shell scripts directly during launch

-currently undergoing testing; please see https://github.com/lisancao/biocswirl/blob/master/biocswirl_dev/bash_scripts/tmux_launch.sh