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apiary.apib
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HOST: http://www.google.com/
--- Lims-management-app ---
---
Welcome to our API documentation for lims-management-app.
S2 API provides a JSON RESTful interface. The path to the root URL `/` only is needed to interact with the API.
All the other actions are embedded in every JSON response.
Please note that all URLs are to be considered unstable. As a consequence, you should only refer to the actions
elements returned in the response.
Please find below the different actions available in the JSON:
* `create` creates a new resource using a HTTP POST request
* `read`, `first` and `last` actions are used for pagination through HTTP GET requests
* `update` action update a resource using a HTTP PUT request
* `delete` action delete a resource using a HTTP DELETE request
In top of the above actions, more specific actions are available to interact between multiple resources.
These actions use generally HTTP POST request and are listed under the root JSON response.
Please note you will generally find two different URLs to create a new resource, which produce an identical result:
`/resources` or `/actions/create_resource`.
---
--
Root
--
The root JSON lists all the resources available through the lims-management-app api and all the actions which can be performed.
A resource responds to all the actions listed under its `actions` elements.
Consider this URL and the JSON response like the entry point for lims-management-app api. All the other interactions through the
API can be performed browsing this JSON response.
GET /
> Accept: application/json
< 200
< Content-Type: application/json
{
"actions": {
"read": "http://example.org/"
},
"samples": {
"actions": {
"create": "http://example.org/samples",
"read": "http://example.org/samples",
"first": "http://example.org/samples/page=1",
"last": "http://example.org/samples/page=-1"
}
},
"sample_collections": {
"actions": {
"create": "http://example.org/sample_collections",
"read": "http://example.org/sample_collections",
"first": "http://example.org/sample_collections/page=1",
"last": "http://example.org/sample_collections/page=-1"
}
},
"uuid_resources": {
"actions": {
"create": "http://example.org/uuid_resources",
"read": "http://example.org/uuid_resources",
"first": "http://example.org/uuid_resources/page=1",
"last": "http://example.org/uuid_resources/page=-1"
}
},
"searches": {
"actions": {
"create": "http://example.org/searches",
"read": "http://example.org/searches",
"first": "http://example.org/searches/page=1",
"last": "http://example.org/searches/page=-1"
}
},
"update_samples": {
"actions": {
"create": "http://example.org/actions/update_sample"
}
},
"delete_samples": {
"actions": {
"create": "http://example.org/actions/delete_sample"
}
},
"bulk_delete_samples": {
"actions": {
"create": "http://example.org/actions/bulk_delete_sample"
}
},
"create_samples": {
"actions": {
"create": "http://example.org/actions/create_sample"
}
},
"bulk_update_samples": {
"actions": {
"create": "http://example.org/actions/bulk_update_sample"
}
},
"create_sample_collections": {
"actions": {
"create": "http://example.org/actions/create_sample_collection"
}
},
"update_sample_collections": {
"actions": {
"create": "http://example.org/actions/update_sample_collection"
}
},
"delete_sample_collections": {
"actions": {
"create": "http://example.org/actions/delete_sample_collection"
}
},
"create_searches": {
"actions": {
"create": "http://example.org/actions/create_search"
}
},
"multi_criteria_filters": {
"actions": {
"create": "http://example.org/multi_criteria_filters",
"read": "http://example.org/multi_criteria_filters",
"first": "http://example.org/multi_criteria_filters/page=1",
"last": "http://example.org/multi_criteria_filters/page=-1"
}
},
"revision": 3
}
--
Sample Resource
--
**Create a new sample**
* `sanger_sample_id_core` is mandatory. It is used as a prefix to generate a unique sanger sample id.
* `state` must belong to `draft`, `published`. If not set, the default state is `draft`.
* If a sample is created with the `published` state, `taxon_id`, `scientific_name`, `common_name` and `supplier_sample_name` are mandatory
* If `taxon_id` is set, it must match with `scientific_name`/`common_name`
* If `sample_type` is set, it must belong to `DNA Human`, `DNA Pathogen`, `RNA`, `Blood`, `Saliva`, `Tissue Non-Tumour`, `Tissue Tumour`, `Pathogen` or `Cell Pellet`
* If `gender` is set, it must belong to `Not applicable`, `Male`, `Female`, `Mixed`, `Hermaphrodite` or `Unknown`
See the example below to know the list of available parameters for a sample.
POST /samples
> Accept: application/json
{
"sample": {
"state": "draft",
"sanger_sample_id_core": "studyX",
"gender": "Male",
"sample_type": "RNA",
"taxon_id": 9606,
"volume": 100,
"date_of_sample_collection": "2013-04-25 10:27 UTC",
"is_sample_a_control": true,
"is_re_submitted_sample": false,
"hmdmc_number": "number",
"supplier_sample_name": "name",
"common_name": "human",
"scientific_name": "homo sapiens",
"ebi_accession_number": "number",
"sample_source": "source",
"mother": "mother",
"father": "father",
"sibling": "sibling",
"gc_content": "content",
"public_name": "name",
"cohort": "cohort",
"storage_conditions": "conditions",
"dna": {
"pre_amplified": true,
"date_of_sample_extraction": "2013-04-25 11:05 UTC",
"extraction_method": "method",
"concentration": 20,
"sample_purified": false,
"concentration_determined_by_which_method": "method"
},
"rna": {
"pre_amplified": true,
"date_of_sample_extraction": "2013-04-25 11:05 UTC",
"extraction_method": "method",
"concentration": 20,
"sample_purified": false,
"concentration_determined_by_which_method": "method"
},
"cellular_material": {
"lysed": true
},
"genotyping": {
"country_of_origin": "England",
"geographical_region": "UK",
"ethnicity": "English"
}
}
}
< 200
< Content-Type: application/json
{
"sample": {
"actions": {
"read": "http://example.org/11111111-2222-3333-4444-555555555555",
"create": "http://example.org/11111111-2222-3333-4444-555555555555",
"update": "http://example.org/11111111-2222-3333-4444-555555555555",
"delete": "http://example.org/11111111-2222-3333-4444-555555555555"
},
"uuid": "11111111-2222-3333-4444-555555555555",
"sanger_sample_id": "studyX-1",
"state": "draft",
"gender": "Male",
"sample_type": "RNA",
"hmdmc_number": "number",
"supplier_sample_name": "name",
"common_name": "human",
"scientific_name": "homo sapiens",
"ebi_accession_number": "number",
"sample_source": "source",
"mother": "mother",
"father": "father",
"sibling": "sibling",
"gc_content": "content",
"public_name": "name",
"cohort": "cohort",
"storage_conditions": "conditions",
"taxon_id": 9606,
"volume": 100,
"date_of_sample_collection": "2013-04-25T10:27:00+00:00",
"is_sample_a_control": true,
"is_re_submitted_sample": false,
"dna": {
"pre_amplified": true,
"date_of_sample_extraction": "2013-04-25T11:05:00+00:00",
"extraction_method": "method",
"concentration": 20,
"sample_purified": false,
"concentration_determined_by_which_method": "method"
},
"rna": {
"pre_amplified": true,
"date_of_sample_extraction": "2013-04-25T11:05:00+00:00",
"extraction_method": "method",
"concentration": 20,
"sample_purified": false,
"concentration_determined_by_which_method": "method"
},
"cellular_material": {
"lysed": true
},
"genotyping": {
"country_of_origin": "England",
"geographical_region": "UK",
"ethnicity": "English"
}
}
}
**Update a sample**
* If a draft sample is updated with the `published` state, `taxon_id`, `scientific_name`, `common_name` and `supplier_sample_name` needs to be set in the sample
* `taxon_id` and `scientific_name`/`common_name` must match
* `sample_type` must belong to `DNA Human`, `DNA Pathogen`, `RNA`, `Blood`, `Saliva`, `Tissue Non-Tumour`, `Tissue Tumour`, `Pathogen` or `Cell Pellet`
* `gender` must belong to `Not applicable`, `Male`, `Female`, `Mixed`, `Hermaphrodite` or `Unknown`
See the example below to know the list of available parameters for a sample.
PUT /11111111-2222-3333-4444-555555555555
> Accept: application/json
{
"gender": "Male",
"state": "published",
"sample_type": "RNA",
"taxon_id": 9606,
"volume": 100,
"date_of_sample_collection": "2013-04-25 10:27 UTC",
"is_sample_a_control": true,
"is_re_submitted_sample": false,
"hmdmc_number": "number",
"supplier_sample_name": "name",
"common_name": "human",
"scientific_name": "homo sapiens",
"ebi_accession_number": "number",
"sample_source": "source",
"mother": "mother",
"father": "father",
"sibling": "sibling",
"gc_content": "content",
"public_name": "name",
"cohort": "cohort",
"storage_conditions": "conditions",
"dna": {
"pre_amplified": true,
"date_of_sample_extraction": "2013-04-25 11:05 UTC",
"extraction_method": "method",
"concentration": 20,
"sample_purified": false,
"concentration_determined_by_which_method": "method"
},
"rna": {
"pre_amplified": true,
"date_of_sample_extraction": "2013-04-25 11:05 UTC",
"extraction_method": "method",
"concentration": 20,
"sample_purified": false,
"concentration_determined_by_which_method": "method"
},
"cellular_material": {
"lysed": true
},
"genotyping": {
"country_of_origin": "England",
"geographical_region": "UK",
"ethnicity": "English"
}
}
< 200
< Content-Type: application/json
{
"sample": {
"actions": {
"read": "http://example.org/11111111-2222-3333-4444-555555555555",
"create": "http://example.org/11111111-2222-3333-4444-555555555555",
"update": "http://example.org/11111111-2222-3333-4444-555555555555",
"delete": "http://example.org/11111111-2222-3333-4444-555555555555"
},
"uuid": "11111111-2222-3333-4444-555555555555",
"sanger_sample_id": "studyX-1",
"gender": "Male",
"state": "published",
"sample_type": "RNA",
"hmdmc_number": "number",
"supplier_sample_name": "name",
"common_name": "human",
"scientific_name": "homo sapiens",
"ebi_accession_number": "number",
"sample_source": "source",
"mother": "mother",
"father": "father",
"sibling": "sibling",
"gc_content": "content",
"public_name": "name",
"cohort": "cohort",
"storage_conditions": "conditions",
"taxon_id": 9606,
"volume": 100,
"date_of_sample_collection": "2013-04-25T10:27:00+00:00",
"is_sample_a_control": true,
"is_re_submitted_sample": false,
"dna": {
"pre_amplified": true,
"date_of_sample_extraction": "2013-04-25T11:05:00+00:00",
"extraction_method": "method",
"concentration": 20,
"sample_purified": false,
"concentration_determined_by_which_method": "method"
},
"rna": {
"pre_amplified": true,
"date_of_sample_extraction": "2013-04-25T11:05:00+00:00",
"extraction_method": "method",
"concentration": 20,
"sample_purified": false,
"concentration_determined_by_which_method": "method"
},
"cellular_material": {
"lysed": true
},
"genotyping": {
"country_of_origin": "England",
"geographical_region": "UK",
"ethnicity": "English"
}
}
}
**Delete a sample**
DELETE /11111111-2222-3333-4444-555555555555
> Accept: application/json
< 200
< Content-Type: application/json
{
"sample": {
"actions": {
"read": "http://example.org/11111111-2222-3333-4444-555555555555",
"create": "http://example.org/11111111-2222-3333-4444-555555555555",
"update": "http://example.org/11111111-2222-3333-4444-555555555555",
"delete": "http://example.org/11111111-2222-3333-4444-555555555555"
},
"uuid": "11111111-2222-3333-4444-555555555555",
"sanger_sample_id": "studyX-1",
"gender": "Male",
"state": "draft",
"sample_type": "RNA",
"hmdmc_number": "number",
"supplier_sample_name": "name",
"common_name": "human",
"scientific_name": "homo sapiens",
"ebi_accession_number": "number",
"sample_source": "source",
"mother": "mother",
"father": "father",
"sibling": "sibling",
"gc_content": "content",
"public_name": "name",
"cohort": "cohort",
"storage_conditions": "conditions",
"taxon_id": 9606,
"volume": 100,
"date_of_sample_collection": "2013-04-25T10:27:00+00:00",
"is_sample_a_control": true,
"is_re_submitted_sample": false,
"dna": {
"pre_amplified": true,
"date_of_sample_extraction": "2013-04-25T11:05:00+00:00",
"extraction_method": "method",
"concentration": 20,
"sample_purified": false,
"concentration_determined_by_which_method": "method"
},
"rna": {
"pre_amplified": true,
"date_of_sample_extraction": "2013-04-25T11:05:00+00:00",
"extraction_method": "method",
"concentration": 20,
"sample_purified": false,
"concentration_determined_by_which_method": "method"
},
"cellular_material": {
"lysed": true
},
"genotyping": {
"country_of_origin": "England",
"geographical_region": "UK",
"ethnicity": "English"
}
}
}
**Bulk create samples**
__FROM LIMS-MANAGEMENT-APP VERSION 2.0.1, BULK_CREATE_SAMPLE ACTION IS NOT AVAILABLE ANYMORE.
USE THE CREATE COLLECTION ACTION INSTEAD.__
* `quantity` and `sanger_sample_id_core` are mandatory
* If `state` is set to `published`, `taxon_id`, `scientific_name`, `common_name` and `supplier_sample_name` are mandatory
* If `taxon_id` is set, it must match with `scientific_name`/`common_name`
* If `sample_type` is set, it must belong to `DNA Human`, `DNA Pathogen`, `RNA`, `Blood`, `Saliva`, `Tissue Non-Tumour`, `Tissue Tumour`, `Pathogen` or `Cell Pellet`
* If `gender` is set, it must belong to `Not applicable`, `Male`, `Female`, `Mixed`, `Hermaphrodite` or `Unknown`
See the example below to know the list of available parameters for a sample.
POST /actions/bulk_create_sample
> Accept: application/json
{
"bulk_create_sample": {
"quantity": 3,
"sanger_sample_id_core": "studyX",
"state": "draft",
"gender": "Male",
"sample_type": "RNA",
"taxon_id": 9606,
"volume": 100,
"date_of_sample_collection": "2013-04-25 10:27 UTC",
"is_sample_a_control": true,
"is_re_submitted_sample": false,
"hmdmc_number": "number",
"supplier_sample_name": "name",
"common_name": "human",
"scientific_name": "homo sapiens",
"ebi_accession_number": "number",
"sample_source": "source",
"mother": "mother",
"father": "father",
"sibling": "sibling",
"gc_content": "content",
"public_name": "name",
"cohort": "cohort",
"storage_conditions": "conditions",
"dna": {
"pre_amplified": true,
"date_of_sample_extraction": "2013-04-25 11:05 UTC",
"extraction_method": "method",
"concentration": 20,
"sample_purified": false,
"concentration_determined_by_which_method": "method"
},
"rna": {
"pre_amplified": true,
"date_of_sample_extraction": "2013-04-25 11:05 UTC",
"extraction_method": "method",
"concentration": 20,
"sample_purified": false,
"concentration_determined_by_which_method": "method"
},
"cellular_material": {
"lysed": true
},
"genotyping": {
"country_of_origin": "England",
"geographical_region": "UK",
"ethnicity": "English"
}
}
}
< 200
< Content-Type: application/json
{
"bulk_create_sample": {
"actions": {
},
"user": "user",
"application": "application",
"result": {
"samples": [
{
"actions": {
"read": "http://example.org/11111111-2222-3333-4444-555555555555",
"create": "http://example.org/11111111-2222-3333-4444-555555555555",
"update": "http://example.org/11111111-2222-3333-4444-555555555555",
"delete": "http://example.org/11111111-2222-3333-4444-555555555555"
},
"uuid": "11111111-2222-3333-4444-555555555555",
"sanger_sample_id": "studyX-1",
"state": "draft",
"gender": "Male",
"sample_type": "RNA",
"hmdmc_number": "number",
"supplier_sample_name": "name",
"common_name": "human",
"scientific_name": "homo sapiens",
"ebi_accession_number": "number",
"sample_source": "source",
"mother": "mother",
"father": "father",
"sibling": "sibling",
"gc_content": "content",
"public_name": "name",
"cohort": "cohort",
"storage_conditions": "conditions",
"taxon_id": 9606,
"volume": 100,
"date_of_sample_collection": "2013-04-25T10:27:00+00:00",
"is_sample_a_control": true,
"is_re_submitted_sample": false,
"dna": {
"pre_amplified": true,
"date_of_sample_extraction": "2013-04-25T11:10:00+00:00",
"extraction_method": "method",
"concentration": 20,
"sample_purified": false,
"concentration_determined_by_which_method": "method"
},
"rna": {
"pre_amplified": true,
"date_of_sample_extraction": "2013-04-25T11:10:00+00:00",
"extraction_method": "method",
"concentration": 20,
"sample_purified": false,
"concentration_determined_by_which_method": "method"
},
"cellular_material": {
"lysed": true
},
"genotyping": {
"country_of_origin": "England",
"geographical_region": "UK",
"ethnicity": "english"
}
},
{
"actions": {
"read": "http://example.org/11111111-2222-3333-4444-666666666666",
"create": "http://example.org/11111111-2222-3333-4444-666666666666",
"update": "http://example.org/11111111-2222-3333-4444-666666666666",
"delete": "http://example.org/11111111-2222-3333-4444-666666666666"
},
"uuid": "11111111-2222-3333-4444-666666666666",
"sanger_sample_id": "studyX-2",
"state": "draft",
"gender": "Male",
"sample_type": "RNA",
"hmdmc_number": "number",
"supplier_sample_name": "name",
"common_name": "human",
"scientific_name": "homo sapiens",
"ebi_accession_number": "number",
"sample_source": "source",
"mother": "mother",
"father": "father",
"sibling": "sibling",
"gc_content": "content",
"public_name": "name",
"cohort": "cohort",
"storage_conditions": "conditions",
"taxon_id": 9606,
"volume": 100,
"date_of_sample_collection": "2013-04-25T10:27:00+00:00",
"is_sample_a_control": true,
"is_re_submitted_sample": false,
"dna": {
"pre_amplified": true,
"date_of_sample_extraction": "2013-04-25T11:10:00+00:00",
"extraction_method": "method",
"concentration": 20,
"sample_purified": false,
"concentration_determined_by_which_method": "method"
},
"rna": {
"pre_amplified": true,
"date_of_sample_extraction": "2013-04-25T11:10:00+00:00",
"extraction_method": "method",
"concentration": 20,
"sample_purified": false,
"concentration_determined_by_which_method": "method"
},
"cellular_material": {
"lysed": true
},
"genotyping": {
"country_of_origin": "England",
"geographical_region": "UK",
"ethnicity": "english"
}
},
{
"actions": {
"read": "http://example.org/11111111-2222-3333-4444-777777777777",
"create": "http://example.org/11111111-2222-3333-4444-777777777777",
"update": "http://example.org/11111111-2222-3333-4444-777777777777",
"delete": "http://example.org/11111111-2222-3333-4444-777777777777"
},
"uuid": "11111111-2222-3333-4444-777777777777",
"sanger_sample_id": "studyX-3",
"state": "draft",
"gender": "Male",
"sample_type": "RNA",
"hmdmc_number": "number",
"supplier_sample_name": "name",
"common_name": "human",
"scientific_name": "homo sapiens",
"ebi_accession_number": "number",
"sample_source": "source",
"mother": "mother",
"father": "father",
"sibling": "sibling",
"gc_content": "content",
"public_name": "name",
"cohort": "cohort",
"storage_conditions": "conditions",
"taxon_id": 9606,
"volume": 100,
"date_of_sample_collection": "2013-04-25T10:27:00+00:00",
"is_sample_a_control": true,
"is_re_submitted_sample": false,
"dna": {
"pre_amplified": true,
"date_of_sample_extraction": "2013-04-25T11:10:00+00:00",
"extraction_method": "method",
"concentration": 20,
"sample_purified": false,
"concentration_determined_by_which_method": "method"
},
"rna": {
"pre_amplified": true,
"date_of_sample_extraction": "2013-04-25T11:10:00+00:00",
"extraction_method": "method",
"concentration": 20,
"sample_purified": false,
"concentration_determined_by_which_method": "method"
},
"cellular_material": {
"lysed": true
},
"genotyping": {
"country_of_origin": "England",
"geographical_region": "UK",
"ethnicity": "english"
}
}
]
},
"quantity": 3,
"state": "draft",
"sanger_sample_id_core": "studyX",
"taxon_id": 9606,
"volume": 100,
"date_of_sample_collection": "2013-04-25 10:27 UTC",
"is_sample_a_control": true,
"is_re_submitted_sample": false,
"hmdmc_number": "number",
"supplier_sample_name": "name",
"common_name": "human",
"scientific_name": "homo sapiens",
"ebi_accession_number": "number",
"sample_source": "source",
"mother": "mother",
"father": "father",
"sibling": "sibling",
"gc_content": "content",
"public_name": "name",
"cohort": "cohort",
"storage_conditions": "conditions",
"gender": "Male",
"sample_type": "RNA",
"dna": {
"pre_amplified": true,
"date_of_sample_extraction": "2013-04-25 11:10 UTC",
"extraction_method": "method",
"concentration": 20,
"sample_purified": false,
"concentration_determined_by_which_method": "method"
},
"rna": {
"pre_amplified": true,
"date_of_sample_extraction": "2013-04-25 11:10 UTC",
"extraction_method": "method",
"concentration": 20,
"sample_purified": false,
"concentration_determined_by_which_method": "method"
},
"cellular_material": {
"lysed": true
},
"genotyping": {
"country_of_origin": "England",
"geographical_region": "UK",
"ethnicity": "english"
}
}
}
**Bulk update samples**
* `by` must belong to `uuid`, `sanger_sample_id`. If `by` is null, it assumes uuids are used.
* `updates` is mandatory
See the example below to know the list of available parameters for a sample.
POST /actions/bulk_update_sample
> Accept: application/json
{
"bulk_update_sample": {
"by": "uuid",
"updates": {
"11111111-2222-3333-4444-555555555555": {"volume": 5000},
"11111111-2222-3333-4444-666666666666": {"volume": 4000}
}
}
}
< 200
< Content-Type: application/json
{
"bulk_update_sample": {
"actions": {
},
"user": "user",
"application": "application",
"result": {
"samples": [
{
"actions": {
"read": "http://example.org/11111111-2222-3333-4444-555555555555",
"create": "http://example.org/11111111-2222-3333-4444-555555555555",
"update": "http://example.org/11111111-2222-3333-4444-555555555555",
"delete": "http://example.org/11111111-2222-3333-4444-555555555555"
},
"uuid": "11111111-2222-3333-4444-555555555555",
"sanger_sample_id": "studyX-1",
"state": "draft",
"gender": "Male",
"sample_type": "RNA",
"hmdmc_number": "number",
"supplier_sample_name": "name",
"common_name": "human",
"scientific_name": "Homo sapiens",
"ebi_accession_number": "number",
"sample_source": "source",
"mother": "mother",
"father": "father",
"sibling": "sibling",
"gc_content": "content",
"public_name": "name",
"cohort": "cohort",
"storage_conditions": "conditions",
"taxon_id": 9606,
"volume": 5000,
"date_of_sample_collection": "2013-04-25T11:27:00+01:00",
"is_sample_a_control": true,
"is_re_submitted_sample": false
},
{
"actions": {
"read": "http://example.org/11111111-2222-3333-4444-666666666666",
"create": "http://example.org/11111111-2222-3333-4444-666666666666",
"update": "http://example.org/11111111-2222-3333-4444-666666666666",
"delete": "http://example.org/11111111-2222-3333-4444-666666666666"
},
"uuid": "11111111-2222-3333-4444-666666666666",
"sanger_sample_id": "studyX-2",
"state": "draft",
"gender": "Male",
"sample_type": "RNA",
"hmdmc_number": "number",
"supplier_sample_name": "name",
"common_name": "human",
"scientific_name": "Homo sapiens",
"ebi_accession_number": "number",
"sample_source": "source",
"mother": "mother",
"father": "father",
"sibling": "sibling",
"gc_content": "content",
"public_name": "name",
"cohort": "cohort",
"storage_conditions": "conditions",
"taxon_id": 9606,
"volume": 4000,
"date_of_sample_collection": "2013-04-25T11:27:00+01:00",
"is_sample_a_control": true,
"is_re_submitted_sample": false
}
]
},
"by": "uuid",
"updates": {
"11111111-2222-3333-4444-555555555555": {"volume": 5000},
"11111111-2222-3333-4444-666666666666": {"volume": 4000}
}
}
}
**Bulk delete samples**
* `sample_uuids` is mandatory
POST /actions/bulk_delete_sample
> Accept: application/json
{
"bulk_delete_sample": {
"sample_uuids": ["11111111-2222-3333-4444-555555555555", "11111111-2222-3333-4444-666666666666"]
}
}
< 200
< Content-Type: application/json
{
"bulk_delete_sample": {
"actions": {
},
"user": "user",
"application": "application",
"result": {
"samples": [
{
"actions": {
"read": "http://example.org/11111111-2222-3333-4444-555555555555",
"create": "http://example.org/11111111-2222-3333-4444-555555555555",
"update": "http://example.org/11111111-2222-3333-4444-555555555555",
"delete": "http://example.org/11111111-2222-3333-4444-555555555555"
},
"uuid": "11111111-2222-3333-4444-555555555555",
"sanger_sample_id": "studyX-1",
"state": "draft",
"gender": "Male",
"sample_type": "RNA",
"hmdmc_number": "number",
"supplier_sample_name": "name",
"common_name": "human",
"scientific_name": "Homo sapiens",
"ebi_accession_number": "number",
"sample_source": "source",
"mother": "mother",
"father": "father",
"sibling": "sibling",
"gc_content": "content",
"public_name": "name",
"cohort": "cohort",
"storage_conditions": "conditions",
"taxon_id": 9606,
"volume": 5000,
"date_of_sample_collection": "2013-04-25T11:27:00+01:00",
"is_sample_a_control": true,
"is_re_submitted_sample": false
},
{
"actions": {
"read": "http://example.org/11111111-2222-3333-4444-666666666666",
"create": "http://example.org/11111111-2222-3333-4444-666666666666",
"update": "http://example.org/11111111-2222-3333-4444-666666666666",
"delete": "http://example.org/11111111-2222-3333-4444-666666666666"
},
"uuid": "11111111-2222-3333-4444-666666666666",
"sanger_sample_id": "studyX-2",
"state": "draft",
"gender": "Male",
"sample_type": "RNA",
"hmdmc_number": "number",
"supplier_sample_name": "name",
"common_name": "human",
"scientific_name": "Homo sapiens",
"ebi_accession_number": "number",
"sample_source": "source",
"mother": "mother",
"father": "father",
"sibling": "sibling",
"gc_content": "content",
"public_name": "name",
"cohort": "cohort",
"storage_conditions": "conditions",
"taxon_id": 9606,
"volume": 5000,
"date_of_sample_collection": "2013-04-25T11:27:00+01:00",
"is_sample_a_control": true,
"is_re_submitted_sample": false
}
]
},
"sample_uuids": [
"11111111-2222-3333-4444-555555555555",
"11111111-2222-3333-4444-666666666666"
],
"sanger_sample_ids": null
}
}
**Bulk delete samples by sanger sample IDs**
* `sanger_sample_ids` is mandatory
POST /actions/bulk_delete_sample
> Accept: application/json
{
"bulk_delete_sample": {
"sanger_sample_ids": ["S2-cd9b200ec5634288ad5b4f56eab2a84f", "S2-745819ae3dfe401caa68a87a90c95a4c"]
}
}
< 200
< Content-Type: application/json
{
"bulk_delete_sample": {
"actions": {
},
"user": "user",
"application": "application",
"result": {
"samples": [
{
"actions": {
"read": "http://example.org/11111111-2222-3333-4444-555555555555",
"create": "http://example.org/11111111-2222-3333-4444-555555555555",
"update": "http://example.org/11111111-2222-3333-4444-555555555555",
"delete": "http://example.org/11111111-2222-3333-4444-555555555555"
},
"uuid": "11111111-2222-3333-4444-555555555555",
"sanger_sample_id": "studyX-1",
"state": "draft",
"gender": "Male",
"sample_type": "RNA",
"hmdmc_number": "number",
"supplier_sample_name": "name",
"common_name": "human",
"scientific_name": "Homo sapiens",
"ebi_accession_number": "number",
"sample_source": "source",
"mother": "mother",
"father": "father",
"sibling": "sibling",
"gc_content": "content",
"public_name": "name",
"cohort": "cohort",
"storage_conditions": "conditions",
"taxon_id": 9606,
"volume": 5000,
"date_of_sample_collection": "2013-04-25T11:27:00+01:00",
"is_sample_a_control": true,
"is_re_submitted_sample": false
},
{
"actions": {
"read": "http://example.org/11111111-2222-3333-4444-666666666666",
"create": "http://example.org/11111111-2222-3333-4444-666666666666",
"update": "http://example.org/11111111-2222-3333-4444-666666666666",
"delete": "http://example.org/11111111-2222-3333-4444-666666666666"
},
"uuid": "11111111-2222-3333-4444-666666666666",
"sanger_sample_id": "studyX-2",
"state": "draft",
"gender": "Male",
"sample_type": "RNA",
"hmdmc_number": "number",
"supplier_sample_name": "name",
"common_name": "human",
"scientific_name": "Homo sapiens",
"ebi_accession_number": "number",
"sample_source": "source",
"mother": "mother",
"father": "father",