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Add previews of alignment/ QC/mutations #1617

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Tracked by #1465
anna-parker opened this issue Apr 18, 2024 · 4 comments
Open
Tracked by #1465

Add previews of alignment/ QC/mutations #1617

anna-parker opened this issue Apr 18, 2024 · 4 comments
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feature Feature proposal website Tasks related to the web application
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@anna-parker
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anna-parker commented Apr 18, 2024

Add preview of alignment state/QC/mutations, similar to LANL HIV database
image

@anna-parker anna-parker added the website Tasks related to the web application label Apr 20, 2024
@chaoran-chen chaoran-chen added this to the MVP (public) milestone Apr 21, 2024
@chaoran-chen chaoran-chen moved this to Backlog in Planning Apr 21, 2024
@theosanderson
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The scrollable and useEffect bits of this are done now - the remaining issue is alignment states/QC metrics (not sure how well we have specified what we want to do there)

@chaoran-chen
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@anna-parker/@theosanderson, I unfortunately don't really understand what this ticket is about, could you please elaborate?

@theosanderson
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theosanderson commented May 22, 2024

@chaoran-chen sorry I missed your reply: I think Anna grouped the points raised about the seq details page into categories. The points here are: points from me about making the sequences appear immediately and appear in FASTA form, which I have since addressed. I think the other points are from Richard and are maybe a bit less defined in terms of exactly what we have decided to implement in an immediate timescale. E.g. I remember Richard has shown other DBs that implement coverage maps but I expect we don't plan to do that for MVP. I'd probably suggest we close this issue as completed and open new issues when we want with specific plans.

@anna-parker anna-parker changed the title Display sequences e.g. with alignment states and QC metrics in a scrollable form (in FASTA format with a header) with useEffect() Add previews of alignment/ QC/mutations May 28, 2024
@anna-parker
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anna-parker commented May 28, 2024

I have renamed to reflect the current state of the issue - I will mark this as post-MVP.

@anna-parker anna-parker modified the milestones: MVP, post-MVP May 28, 2024
@chaoran-chen chaoran-chen added the feature Feature proposal label Sep 1, 2024
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Labels
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